| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2548 |
|---|
| Symbol | |
|---|
| ID | 4785209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 2715294 |
|---|
| End bp | 2716871 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640091116 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_001021736 |
|---|
| Protein GI | 124267732 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00975221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.500866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCC GCACCAAGCT GAGCCTGACC TTCGGCGGAC TCTCGGTGCT CGTGCTGTTC
GTTGCCGGAC TGGCGATGAA GTCCCTCGCC GAGGAGCACG ACCAGTTCGT CGACTACGTG
CACGGCGTCA ATGCCCGGGC ACAGGCGGCA GCCGATGTGC GCGCAGCCGT GGACCGCCGC
GCCATCGCGG CGCGCAACCT CGTGCTCGTC CGCAAGGCCG AGGATCTGGC CGCGGAACAG
AATTCGGTGG TCGCGGCGCA TGAAGCGGTG CAGGCGAACC TCGGGACGCT GAATCAGCTG
GTGACCCGGG CCGCGGACCT GCCGGAGACG GCGCGCAGTC TCGTGGCCGA GATGAACCGC
ATCAAGGCAG CCTACGGGCC GGTCGCACTG GAGATCGTGA GGCTCGCCGC CGCCGGCCAG
CACGACGCGG CCATCGCCCG CATGAATGCC GACTGCCGCC CGCTGCTGGC CGCGCTGGTC
AAGGCATCCG ACGACTACCG CGACTACACG CTGAGCCGCG CGGTGCAGCT CACCGAAACG
GCCGAGGCCG ACTACCTGCT GCACCGCAAT CTGCTGATCC TCGGCTGCGT GATCGCCTTC
CTGTCGGCCG CCGTGTCGGG CACGCTGATC ACGCGCAGCC TGACCCGCGC GCTGGGGGCC
GAACCGGGTC AACTGGGCAC GGTGGCGCAA CGCGTCGCCC AGGGCGACCT GAGCCGGGTG
GACGGCGCCG CGGACGCACC GCGCGGCAGC GTGCTGGCCT CGCTCGGCGC CATGCAGGCC
AGCCTGGCGG ACATCGTGGG CCGGGTGCGC AACAGCAGCG ACTGCATCGC CACCGGGTCG
GCGCAGATCG CCACCGGCAA CGCCGACCTG AGCCAGCGGA CCGAGGAACA GGCGAGCAAC
CTGCAGCAGA CAGCCGCCTC CATGGAGGAG CTGACCGCGA CGGTGAAGCA GAACGCCGAC
ACGGCACGCC AGGCCACGCA GCTCGCCGGC TCGGCCTCGG GCGCCGCGGC GCACGGCGGC
AGCGTGGTGT CCGAGGTGGT GGCCACCATG GGCGCGATCA CCGAATCGAG CCGCAAGATC
TCCGACATCA TCGGCGTGAT CGACGGCATC GCGTTCCAGA CCAACATCCT GGCGCTCAAT
GCGGCGGTGG AGGCTGCCCG CGCCGGCGAG CAGGGGCGCG GATTCGCGGT GGTGGCCGGT
GAGGTGCGCA ACCTGGCGCA GCGCAGCGCC GAGGCGGCCA AGGAGATCAA GGCCCTGATC
GAGGACAGCG TCGAGAAGGT CGGCACCGGC TCTCGGCTGG TGAACGATGC CGGGCAGTCG
ATGAACGAGA TCGTTGCCCA GGTCCAGCGC ATGAACGACC TGATCAGCGA GATCAGCGCC
GCCAGCGTCG AGCAGAGCGG CGGCATCAGC CAGATCGGCA ACGCGGTCAA CCAGCTCGAT
CAGGTCACGC AGCAGAACGC CGCGCTGGTG GAGGAAAGCG CGGCGGCGGC CGAGAGCCTG
AAGCACCAAG CCGCCACGCT GGCCGATCTG GTCAGCGTGT TCAGGATCGA AGGCTCATTG
CGAACCACGT CCTTCTGA
|
|---|
| Protein sequence | MTVRTKLSLT FGGLSVLVLF VAGLAMKSLA EEHDQFVDYV HGVNARAQAA ADVRAAVDRR
AIAARNLVLV RKAEDLAAEQ NSVVAAHEAV QANLGTLNQL VTRAADLPET ARSLVAEMNR
IKAAYGPVAL EIVRLAAAGQ HDAAIARMNA DCRPLLAALV KASDDYRDYT LSRAVQLTET
AEADYLLHRN LLILGCVIAF LSAAVSGTLI TRSLTRALGA EPGQLGTVAQ RVAQGDLSRV
DGAADAPRGS VLASLGAMQA SLADIVGRVR NSSDCIATGS AQIATGNADL SQRTEEQASN
LQQTAASMEE LTATVKQNAD TARQATQLAG SASGAAAHGG SVVSEVVATM GAITESSRKI
SDIIGVIDGI AFQTNILALN AAVEAARAGE QGRGFAVVAG EVRNLAQRSA EAAKEIKALI
EDSVEKVGTG SRLVNDAGQS MNEIVAQVQR MNDLISEISA ASVEQSGGIS QIGNAVNQLD
QVTQQNAALV EESAAAAESL KHQAATLADL VSVFRIEGSL RTTSF
|
|---|
| |