| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2530 |
|---|
| Symbol | |
|---|
| ID | 4785076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 2698951 |
|---|
| End bp | 2700594 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640091100 |
|---|
| Product | membrane-bound lytic murein transglycosylase D, putative |
|---|
| Protein accession | YP_001021720 |
|---|
| Protein GI | 124267716 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.171076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.494902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC TGCTGCTCAC GCCGAAGCGT CGCGCCACGC TGTCCGTGCT GGCCCTGACG
CTCGTGCTGG CAGCCTGCGC CACCGCTCCG TCGCCCGAAC CGGTCACGGC TCCCGTCGTC
AACGCCGGCG CCGCCGCGCC CGGCGCCACG CCGCCCCCCG AGGCCGCAGC GCCCGGCGTG
GCCGCCGCCA GCGCCGCCGC GCCGAACGAT GCCGCCGTCG CGGCCGGCCC ACCGACCGAT
CCCGTGCGCC CGGAAGAACC GGTCGACCTC GACGCCATCG CGGCGCAACG CGATCTGTGG
ATACGCGTGC GGCGCGGCTT CGCGATGCCC GACCTCGACA CGCCGCTGGT CCGCGACCGC
GAGCAGTGGT ACGCCACGCG GCCCGATTAC GTGCAGCGCA TGACCGAGCG GTCGAGTCGC
TACCTGTTCC ATGTGGTCGA GGAGATCGAA CGGCGCGGCA TGCCCACCGA ACTGGCCCTG
CTGCCGTTCA TCGAGAGTGC CTTCAACCCG CAGGCCATGT CGACCGCCAA GGCCTCGGGC
ATGTGGCAGT TCATCCCGTC GACCGGCAAG CACTTCGATC TGGCGCAGAA CGCCTTCCGC
GACGACCGGC GCGACGTGCT GGCCTCCACG CGCGCCGCGC TCGACTACCT GCAGAAGCTG
CACGGCATGT TCGGCGACTG GCATCTCGCG CTGGCCGCCT ACAACTGGGG CGAAGGCAGC
GTGGGCCGCG CGATCGCCCG CAACCAGAAA CTCGGCCTGC CGACCGACTA CCTCAGCCTG
AAGATGCCGG ACGAGACGCG CTACTACGTG CCCAAGCTGC AGGCCGTGAA GAACCTCATC
GCGCGGCCAG AGGCCTTCGG ATTGACGCTG CCCGCGATCG AGAACCACCC CTACTTCCTG
AGCGTGCCGA TCCAGCGCGA CATCGACGCA GCCCTGGTGG CCCGTCTGGC CGGCCTGCCG
CTCGACGAAT TCCACGCGCT GAACCCCTCG CTCAACAAGC CGGTGATCCT GGCCGCCGGC
ACGCCGCAGG TGCTGCTGCC CTACGACAAC GCCAACGAGT TCGTGCGCGC GCTGCCCGGT
TACCAGGGCC CGCTGGCCAG CTGGACCGCC TGGGTCGTGC CGACGACGAT GAAGCCGGCC
GATGCCGCCA AGCGGGTCGG CATGAGCGAA GCCGAACTGC GCGAGGCCAA TCGCATCCCG
CCGCGCATGC TGGTGCGCGC CGGCTCGACG CTGATGGTGC CCCGGCACCC GCACCGGCAC
CTCGACGACG TGTCCGAGCG CGTGGCCGAC AACGCGACGA TGCTGCTCGC CCCTGACGCC
CCGGCGCTGC GCCGCACCAC CGTGAAGGCG CGCAAGAATG ACAGCGTGGC CTCGATCGCC
GCACGCTACC GGCTCAGCGC CGCCAGCGTG GCCGACTGGA ACAAGGTGGC GGCCGGCGCC
CACTTCAAGA CCGGCCAGGC GGTGGTGCTC TACCTGCCGG GCAGGGCCGC GACCGCCCGC
AAGAGCAGCC CCAGCACGAC GGCCAAGGCC CGCGGCAACC GCGCCACCAC GTCAGCCACG
GCCCAGCGCA AGTCGGCCGG CAAGTCGGTG GCCGCGCGCC CGACCGCGCA GGGCAAGAGC
CGCGTGGCCG CCAACAGCCG CTGA
|
|---|
| Protein sequence | MTALLLTPKR RATLSVLALT LVLAACATAP SPEPVTAPVV NAGAAAPGAT PPPEAAAPGV
AAASAAAPND AAVAAGPPTD PVRPEEPVDL DAIAAQRDLW IRVRRGFAMP DLDTPLVRDR
EQWYATRPDY VQRMTERSSR YLFHVVEEIE RRGMPTELAL LPFIESAFNP QAMSTAKASG
MWQFIPSTGK HFDLAQNAFR DDRRDVLAST RAALDYLQKL HGMFGDWHLA LAAYNWGEGS
VGRAIARNQK LGLPTDYLSL KMPDETRYYV PKLQAVKNLI ARPEAFGLTL PAIENHPYFL
SVPIQRDIDA ALVARLAGLP LDEFHALNPS LNKPVILAAG TPQVLLPYDN ANEFVRALPG
YQGPLASWTA WVVPTTMKPA DAAKRVGMSE AELREANRIP PRMLVRAGST LMVPRHPHRH
LDDVSERVAD NATMLLAPDA PALRRTTVKA RKNDSVASIA ARYRLSAASV ADWNKVAAGA
HFKTGQAVVL YLPGRAATAR KSSPSTTAKA RGNRATTSAT AQRKSAGKSV AARPTAQGKS
RVAANSR
|
|---|
| |