Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A2001 |
Symbol | |
ID | 4783788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | - |
Start bp | 2142989 |
End bp | 2145049 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640090571 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_001021194 |
Protein GI | 124267190 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.850732 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.19762 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCGA ACGACACTCC GCCCAGCGAT ACGCAGCCCG ATGCCACGCC GCACACCGGC GACGACAGCG CCGCTGCAGC GCCGGTCAAG CGACGCACGC GCAAGGCGGC GACGCCAGCG GCCGCGAGCA CGGCAGCCGT GGAGGTGACG GCGGCCGTCG AAGCCGATGC GGACACAGCG GCACCGAAGA CCCCGCGGCG GCGCAAGCCC AAGGCCGATG TGGCTGTCGC GGAGTCGTCC GATGCCGTCG CGTCGCCCGT GGCGGCTGAT GCGCCGGCGG CGGCCGAGTC CCGACCGGCT CCGATCGAGC GACCTGTACC GGTCTCGGCG CCGGCTGCCG CGGAAGCGGC CGAAGGAACA GCCGCCGACA GCGAACCGAC CGAAGTGGCC GGATCCGGCG AATCGGGGGC TGCGGCCGGC GACGAATCGG TCGAGCGCAG CCGTCGTGGC CGCAACCGGC GCCGAGGCCG CAAGGACCGC GCCGGCCGTG AAGGCGGCGA GGCTGCGGGC GCCGATGGCT CGGCCGAGCC CGGCGCCGAA CGCCCGCCGC AGGCACCGCG ACCGGCGCTC GATCCGGCGC TGGTGGTGGA GCGCTTCGAG GAAGTGCTGT CGGGTGCCTA CGACGCCGAG CCACCCGAGC CGGACGATGA GGCCAGCGTC GAGCAGTCGA CCAAGCGCGT GCTGCGCCCC GAGCCCGAGG CGCCCAAGCT GCACAAGGTG CTGGCGCAGT CGGGCATCGG TTCGCGCCGC GACATGGAAC AGTTCATTCT CGACGGCAAG GTCACGGTCA ACGACGAGGT GGCCCATGTG GGCATGCGCA TCTCCTACGG CGACCGCATC GCCGTCGACG GCAAGCCGGT GCGTCTGCGC ATCCAGCCGG GCCCGGCGCG GCTGCTGGCC TATCACAAGC CGACCGGCGA AGTGGTCACG CTGAACGACC CGGAAGGGCG TCCCACGGTG TTTCGCCGTC TGCCGCGCCT TCAGCAGGGC AAGTGGCAGT CCGTCGGTCG CCTGGATATC AACACCGAGG GCCTGCTGCT GTTCACCAAC TCGGGTGAAC TGGCGAACCA GCTGATGCAT CCCCGCTTCG GCGTCGAGCG CGAGTACGCG GTGCGCGTGC TCGGCAGCCT GAACGAGGAG CAGCGCGCGA AGCTGCTCGA GGGCGTGGAG ATCGACGGTC AGACCGCCGG CTTCAAGAGC ATCGAGGAGG GCGGTGGCGA AGGCGCGAAC CGCTGGTACC GCGTGGTCAT CACCGAAGGG CGCAACCGTG AGGTGCGCAA GCTGTTCGAC AAGGTCGGCC TGGCCGTGAG CCGTCTGATC CGCATTCGCT ACGGCACTGT GGTGCTGCCG CGCGGCCTCA AGCGCGGCGT CTGGGTCGAG CTCGACGACC AGGACCTGCG CGCGATCCGC CAGCTGGCCA GCGGCAACCG TGGCGCAGCG GCGCAAAGCG AGTCGCGCGA CGCTCAGGGC AACCGCGAAC AACGGCGCAA CAACGGTCGC AACGGCAAGC CCGAGCGCAA CGCGCGCGGG CCGCAGCAGG GCGGGGCCCG CGCGCAGGGC CAGGGCGGCG GCGAGCGCGG CCCGCGCCGC GAGCCGCGTG AATCGCGGTT CGGCGAGGCC GCACCCGACA CCGACGGCGC TGGAGAGGAA GACTTCGGCC GCATCCCCAA TCCGCTGGAG CAGACCTTCG ACCGTCGCTT TGCGAAGGGC CCGCGCCGCG GCGCAGCCCA GGGCTTCGGG CATGGTGGCT CGCAGTCGGA TCACGACGCC GGCGGCCCGC CCGGAACCAT TCCGAATCCG CTGGAACAGA CCTTCGACAA GCGCTTCGTC AAGGGCTCTC AGCGCATCAA TGCCGGCTTC GGCCGGCACG ATGCGCACCA GCCCGAGCCG GGCGCCAGGA AGGGCGGGCC GAAGCAGCCC GATCCGATGC AGACCTCGGT GGGCTACATC GGCGCCGATG CCTACTTCAA CAAGGCCGGC GGCAAGCGGG GCGGTGGGGG TGGGCGCGGA GGCCAGGGGG GTCGTGGGGG CGGCGGTGGG GGCCGCGGAC CGCGCCGCTG A
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Protein sequence | MNSNDTPPSD TQPDATPHTG DDSAAAAPVK RRTRKAATPA AASTAAVEVT AAVEADADTA APKTPRRRKP KADVAVAESS DAVASPVAAD APAAAESRPA PIERPVPVSA PAAAEAAEGT AADSEPTEVA GSGESGAAAG DESVERSRRG RNRRRGRKDR AGREGGEAAG ADGSAEPGAE RPPQAPRPAL DPALVVERFE EVLSGAYDAE PPEPDDEASV EQSTKRVLRP EPEAPKLHKV LAQSGIGSRR DMEQFILDGK VTVNDEVAHV GMRISYGDRI AVDGKPVRLR IQPGPARLLA YHKPTGEVVT LNDPEGRPTV FRRLPRLQQG KWQSVGRLDI NTEGLLLFTN SGELANQLMH PRFGVEREYA VRVLGSLNEE QRAKLLEGVE IDGQTAGFKS IEEGGGEGAN RWYRVVITEG RNREVRKLFD KVGLAVSRLI RIRYGTVVLP RGLKRGVWVE LDDQDLRAIR QLASGNRGAA AQSESRDAQG NREQRRNNGR NGKPERNARG PQQGGARAQG QGGGERGPRR EPRESRFGEA APDTDGAGEE DFGRIPNPLE QTFDRRFAKG PRRGAAQGFG HGGSQSDHDA GGPPGTIPNP LEQTFDKRFV KGSQRINAGF GRHDAHQPEP GARKGGPKQP DPMQTSVGYI GADAYFNKAG GKRGGGGGRG GQGGRGGGGG GRGPRR
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