| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2001 |
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| Symbol | |
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| ID | 4783788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 2142989 |
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| End bp | 2145049 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640090571 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_001021194 |
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| Protein GI | 124267190 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.850732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.19762 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCGA ACGACACTCC GCCCAGCGAT ACGCAGCCCG ATGCCACGCC GCACACCGGC
GACGACAGCG CCGCTGCAGC GCCGGTCAAG CGACGCACGC GCAAGGCGGC GACGCCAGCG
GCCGCGAGCA CGGCAGCCGT GGAGGTGACG GCGGCCGTCG AAGCCGATGC GGACACAGCG
GCACCGAAGA CCCCGCGGCG GCGCAAGCCC AAGGCCGATG TGGCTGTCGC GGAGTCGTCC
GATGCCGTCG CGTCGCCCGT GGCGGCTGAT GCGCCGGCGG CGGCCGAGTC CCGACCGGCT
CCGATCGAGC GACCTGTACC GGTCTCGGCG CCGGCTGCCG CGGAAGCGGC CGAAGGAACA
GCCGCCGACA GCGAACCGAC CGAAGTGGCC GGATCCGGCG AATCGGGGGC TGCGGCCGGC
GACGAATCGG TCGAGCGCAG CCGTCGTGGC CGCAACCGGC GCCGAGGCCG CAAGGACCGC
GCCGGCCGTG AAGGCGGCGA GGCTGCGGGC GCCGATGGCT CGGCCGAGCC CGGCGCCGAA
CGCCCGCCGC AGGCACCGCG ACCGGCGCTC GATCCGGCGC TGGTGGTGGA GCGCTTCGAG
GAAGTGCTGT CGGGTGCCTA CGACGCCGAG CCACCCGAGC CGGACGATGA GGCCAGCGTC
GAGCAGTCGA CCAAGCGCGT GCTGCGCCCC GAGCCCGAGG CGCCCAAGCT GCACAAGGTG
CTGGCGCAGT CGGGCATCGG TTCGCGCCGC GACATGGAAC AGTTCATTCT CGACGGCAAG
GTCACGGTCA ACGACGAGGT GGCCCATGTG GGCATGCGCA TCTCCTACGG CGACCGCATC
GCCGTCGACG GCAAGCCGGT GCGTCTGCGC ATCCAGCCGG GCCCGGCGCG GCTGCTGGCC
TATCACAAGC CGACCGGCGA AGTGGTCACG CTGAACGACC CGGAAGGGCG TCCCACGGTG
TTTCGCCGTC TGCCGCGCCT TCAGCAGGGC AAGTGGCAGT CCGTCGGTCG CCTGGATATC
AACACCGAGG GCCTGCTGCT GTTCACCAAC TCGGGTGAAC TGGCGAACCA GCTGATGCAT
CCCCGCTTCG GCGTCGAGCG CGAGTACGCG GTGCGCGTGC TCGGCAGCCT GAACGAGGAG
CAGCGCGCGA AGCTGCTCGA GGGCGTGGAG ATCGACGGTC AGACCGCCGG CTTCAAGAGC
ATCGAGGAGG GCGGTGGCGA AGGCGCGAAC CGCTGGTACC GCGTGGTCAT CACCGAAGGG
CGCAACCGTG AGGTGCGCAA GCTGTTCGAC AAGGTCGGCC TGGCCGTGAG CCGTCTGATC
CGCATTCGCT ACGGCACTGT GGTGCTGCCG CGCGGCCTCA AGCGCGGCGT CTGGGTCGAG
CTCGACGACC AGGACCTGCG CGCGATCCGC CAGCTGGCCA GCGGCAACCG TGGCGCAGCG
GCGCAAAGCG AGTCGCGCGA CGCTCAGGGC AACCGCGAAC AACGGCGCAA CAACGGTCGC
AACGGCAAGC CCGAGCGCAA CGCGCGCGGG CCGCAGCAGG GCGGGGCCCG CGCGCAGGGC
CAGGGCGGCG GCGAGCGCGG CCCGCGCCGC GAGCCGCGTG AATCGCGGTT CGGCGAGGCC
GCACCCGACA CCGACGGCGC TGGAGAGGAA GACTTCGGCC GCATCCCCAA TCCGCTGGAG
CAGACCTTCG ACCGTCGCTT TGCGAAGGGC CCGCGCCGCG GCGCAGCCCA GGGCTTCGGG
CATGGTGGCT CGCAGTCGGA TCACGACGCC GGCGGCCCGC CCGGAACCAT TCCGAATCCG
CTGGAACAGA CCTTCGACAA GCGCTTCGTC AAGGGCTCTC AGCGCATCAA TGCCGGCTTC
GGCCGGCACG ATGCGCACCA GCCCGAGCCG GGCGCCAGGA AGGGCGGGCC GAAGCAGCCC
GATCCGATGC AGACCTCGGT GGGCTACATC GGCGCCGATG CCTACTTCAA CAAGGCCGGC
GGCAAGCGGG GCGGTGGGGG TGGGCGCGGA GGCCAGGGGG GTCGTGGGGG CGGCGGTGGG
GGCCGCGGAC CGCGCCGCTG A
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| Protein sequence | MNSNDTPPSD TQPDATPHTG DDSAAAAPVK RRTRKAATPA AASTAAVEVT AAVEADADTA
APKTPRRRKP KADVAVAESS DAVASPVAAD APAAAESRPA PIERPVPVSA PAAAEAAEGT
AADSEPTEVA GSGESGAAAG DESVERSRRG RNRRRGRKDR AGREGGEAAG ADGSAEPGAE
RPPQAPRPAL DPALVVERFE EVLSGAYDAE PPEPDDEASV EQSTKRVLRP EPEAPKLHKV
LAQSGIGSRR DMEQFILDGK VTVNDEVAHV GMRISYGDRI AVDGKPVRLR IQPGPARLLA
YHKPTGEVVT LNDPEGRPTV FRRLPRLQQG KWQSVGRLDI NTEGLLLFTN SGELANQLMH
PRFGVEREYA VRVLGSLNEE QRAKLLEGVE IDGQTAGFKS IEEGGGEGAN RWYRVVITEG
RNREVRKLFD KVGLAVSRLI RIRYGTVVLP RGLKRGVWVE LDDQDLRAIR QLASGNRGAA
AQSESRDAQG NREQRRNNGR NGKPERNARG PQQGGARAQG QGGGERGPRR EPRESRFGEA
APDTDGAGEE DFGRIPNPLE QTFDRRFAKG PRRGAAQGFG HGGSQSDHDA GGPPGTIPNP
LEQTFDKRFV KGSQRINAGF GRHDAHQPEP GARKGGPKQP DPMQTSVGYI GADAYFNKAG
GKRGGGGGRG GQGGRGGGGG GRGPRR
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