| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1866 |
|---|
| Symbol | |
|---|
| ID | 4786746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1993921 |
|---|
| End bp | 1994598 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640090436 |
|---|
| Product | LexA repressor |
|---|
| Protein accession | YP_001021059 |
|---|
| Protein GI | 124267055 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.306175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.097815 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACG CCCCCAAGCT CACCGCCAGG CAGCAGCAGA TCCTTGATCT GGTGCAGACC
TCGATCGAGC GCACCGGATC ACCGCCCACG CGCGCCGAAA TCGCCGCCGA ACTCGGCTTC
CGTTCTGCCA ACGCGGCGGA GGAGCACCTG CAGGCCCTGG CACGCAAGGG CGTGATCGAA
CTGGTGGGCG GCACCTCGCG GGGCATCCGT CTGAAGTCTG ACACATTGCG TTCGCTGAAC
CAGTTGCGCA ACAAGCAGTT CTCGCTGCCG CTGCCCAGCC TGTCGCAGCT GATGCTGCCG
CTGGTCGGGC GTGTGGCTGC GGGCAGCCCC ATCCTGGCGC AGGAACACAT CGACCAGAGC
TATGCGATCG AGGCCAGCAT GTTCCCTCGA CGGCCCGACT ACCTGCTCAA GGTGCGGGGC
ATGAGCATGC GCGACGCCGG CATCCTCGAT GGCGACCTGC TCGCAGTGCA GAAGGCCCGG
GAAGCCAAGA ACGGGCAGAT CGTCGTCGCC CGCCTGGGCG ACGAGGTCAC GGTCAAGCGC
TTCCGGCGCG TGCGCGGCAC GATCGAACTG CTGCCCGAGA ACCCGGATTT CGAGCCCATT
GTCGTCACGC CGGAGAGCGG TGAGTTCGAG ATCGAGGGCT TGGCCGTCGG GCTCATCCGC
AACACCCTGC TCATGTGA
|
|---|
| Protein sequence | MDDAPKLTAR QQQILDLVQT SIERTGSPPT RAEIAAELGF RSANAAEEHL QALARKGVIE
LVGGTSRGIR LKSDTLRSLN QLRNKQFSLP LPSLSQLMLP LVGRVAAGSP ILAQEHIDQS
YAIEASMFPR RPDYLLKVRG MSMRDAGILD GDLLAVQKAR EAKNGQIVVA RLGDEVTVKR
FRRVRGTIEL LPENPDFEPI VVTPESGEFE IEGLAVGLIR NTLLM
|
|---|
| |