| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1777 |
|---|
| Symbol | |
|---|
| ID | 4784444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 1911804 |
|---|
| End bp | 1913657 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640090348 |
|---|
| Product | putative acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_001020971 |
|---|
| Protein GI | 124266967 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.130183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0640101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTCC GCGCCACGCT CGACTTCCTG CTGCACGACT GGCTGCGCGT CGAGACGCTG
ACGCAACGCC CGCGCTTCGC CGAGCACAGC CGCGAGACCT TCGACGCGGT GCTCGACACC
TGCGAACGCA TCGCCCGCGA GACCTTCGAG CCGGCCAACC GGCGCGCCGA CGTGCAGGAG
CCGCACTTCG ACGGCGAGCG CGTGCACTTG CCGGAGAGCA CCAGGACCGC GACCGAGGCC
TACGCCGCGT CGGGCATGCT GGCTGCGGCG CAGGACGTCG AGATCGGCGG CATGCAGTTG
CCCTGCGTGG TCGAGATGGC CGCCAACGCC TGCTTCTTCA AGGGCAGCGT GGCGATCAGC
GCCTACGCGA TGCTGACCAC CGGCAACGCC AGCCTGCTGA TGGCGCACGG CACGCCGCAG
CAGATCGACA GCTTCGCGCG GCACGAGTTC TCCGGTCGCT GGTTCGGCAG CATGTGCCTG
TCCGAGCCGC AGGCCGGCTC CAGCCTCGGC GACGTCACCA CCCGCGCGCG CCCCGACGGC
GAGGGAAGCG AGCACGATCC GCTGGGGCCG CGCTACCGGC TCAGTGGCCA CAAGATGTGG
ATCTCGGGTG GCGAGCACGA GCTCACCGAG AACATCGTCC ACCTCGTGCT CGCCAAGATC
CCCGCGGACG ACGGCACGCT GCCGGCCGGC GTGAAGGGCC TGTCGCTGTT CATCGTGCCC
AAGTGGCTGG TGCAGCCCGG AGGCCGACTC ACCGGCGAGC GCAACGACGT GGCGCTGGCA
GGCCTGAACC ACAAGCTCGG CTACCGCGGC ACCACCAACA CGCTGCTGAA CTTCGGCGAA
GGCCGCTTCC GGCCGGGCGG CGCGGCCGGG GCGGTCGGCT ACCGCGTCGG CGCGCCGGGC
GAGGGCCTGC GCTGCATGTT CCACATGATG AACGAGGCGC GCATCGGCGT CGGCCTCGGC
GCGGTGATGC TGGGCTACGC CGGCTACGAG AGCAGCCTGG CCTACGCGAA GCAGCGGCCA
CAGGGCCGGC CGCTCGGTGC CAAGGACGCC GGCCGCCCGC CGGTGGCCAT CGTCGAGCAC
GCCGACGTGA AGCGCATGCT GCTGGCGCAG AAGGCCTACG TCGAGGGCGG TCTGGCGCTG
GCGCTCTACT GCGCGCGGCT GGTCGACGAC AAGCGCAGCG GCAGCGCGAC CGAGCAGGCC
GAGGCCGGCG TGCTGCTGGA GCTGCTGACG CCGATCGCGA AGAGCTGGCC CAGCGAGTGG
TGCCTGGAGG CCAACAGCCT GGCGATCCAG GTGCTCGGCG GCAGCGGCTA CACGCGCGAT
TTCCCGGTCG AGCAGCACTG GCGCGACAAC CGGCTGAACA TGATCCACGA GGGCACCCAC
GGCATCCAGG GGCTGGACCT GCTGGGCCGC AAGGTGGTGA TGGATGGAGG AAAGGGCCTG
AGGCTGCTGG CCGGCCGCAT CGACGCCAGC ATCGCCCGGG CCGGCCAGGT GGCAGGGCTG
GCGGAGCAGG GCAACGCGCT GGCGCGGGCG CTGCAGCACC TGGGCGCCGC CACCAAGGCG
GCCTGGGCCA GCGGTGAGCC GCGCGACGCG CTGGCCAATG CCACGCCCTA CCTGCAAGCC
TTCGGCCACG TGGTGCTGGC GTGGATGTGG CTGGAGTTGG CGCTGGCCGC CCGCGCGGCG
CTGGACGCTG GCAGCGACAC GGCGTCAGGC AGCACCGCAG CGGCGCTCTA CCATGGCAAG
CTCGCCGCGG CGCGCTACTT CTTCCACTAC GAGCTGCCCA AGATCACGGC CTGGCTCGCG
GTGGTCGAGA CGCGCGACGC GACCTGCCGC GACCTGGACC CCGACTGCCT CTGA
|
|---|
| Protein sequence | MSFRATLDFL LHDWLRVETL TQRPRFAEHS RETFDAVLDT CERIARETFE PANRRADVQE
PHFDGERVHL PESTRTATEA YAASGMLAAA QDVEIGGMQL PCVVEMAANA CFFKGSVAIS
AYAMLTTGNA SLLMAHGTPQ QIDSFARHEF SGRWFGSMCL SEPQAGSSLG DVTTRARPDG
EGSEHDPLGP RYRLSGHKMW ISGGEHELTE NIVHLVLAKI PADDGTLPAG VKGLSLFIVP
KWLVQPGGRL TGERNDVALA GLNHKLGYRG TTNTLLNFGE GRFRPGGAAG AVGYRVGAPG
EGLRCMFHMM NEARIGVGLG AVMLGYAGYE SSLAYAKQRP QGRPLGAKDA GRPPVAIVEH
ADVKRMLLAQ KAYVEGGLAL ALYCARLVDD KRSGSATEQA EAGVLLELLT PIAKSWPSEW
CLEANSLAIQ VLGGSGYTRD FPVEQHWRDN RLNMIHEGTH GIQGLDLLGR KVVMDGGKGL
RLLAGRIDAS IARAGQVAGL AEQGNALARA LQHLGAATKA AWASGEPRDA LANATPYLQA
FGHVVLAWMW LELALAARAA LDAGSDTASG STAAALYHGK LAAARYFFHY ELPKITAWLA
VVETRDATCR DLDPDCL
|
|---|
| |