| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1679 |
|---|
| Symbol | virB10 |
|---|
| ID | 4785764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 1805201 |
|---|
| End bp | 1806655 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640090252 |
|---|
| Product | type IV secretory pathway, VirB10 component |
|---|
| Protein accession | YP_001020876 |
|---|
| Protein GI | 124266872 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.394042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACG ACCCGAGCGA TCCGCGGGAC CGCGATCCAG ACCTGGGCGC CGAGATCGAG
CCCGACGGCA GTGGCATCTC GCCCCTGCCC GGCGAGCCCG GCATTCCCGA TGTCGCTGCC
CGGCAGCGCG TTTCGATGTC GAAGAAGGGC CTGCTGGCCG TGGCGCTGCT CGTCGGCTCC
CTGGTCGCGG TGGCGGCAGT CACCATCCAG CGCTTCTCGG CCAGCGGCAA GAAGGCCGAC
GAGGCGGAGT CGAAGCTGGT GCGCGACAAG CCGACCGCAG CCACGGCAGA GCCGCGCAGG
CTCGAGATGC CGCCCGCTCC AACAGCCAGC GCAGCGGTGG CCACTGCACC GCGCATCCCG
GCCCTGACGC CCACCGCTGA CGAGCTGGCC GAACCCATCG GCGTGCGGCG CACCGGATCG
GCGGCACCCG CACCGGGTGG CCCGAAGGTG GTCCCGCCGG AGGATGCCCC CGTCTTGCTG
GTCACCACCC GGCCGGGGGC ACTCCCTCCG CAAGGGTCGT CCAACCGAAG GATGGATGCT
GGTGCACCGC CTGACGAGGG CCCGACGGCG GCCGAGCCCG CCGACGCGAA CGATCCGCTC
GCCGCAACCT CCCGCAACCT GCAGGGCTAT CAGCGCCAGC TCCAGGGCCT GCTCGACAAC
CTCACCAAGA CCGCGGCGCT GGCCACGGGC CAGGCCACCG GGCAGCTGCC GTCGGGGTCC
CTCCTCGGTG GGCCCCCGAT GGCGGGCACC GCACCCATCG GTGCGCCACC CGCAGGGGGT
GGCCTGTTCG GGGGCCAGCT TCAGGGGTCC TCCACCCCGA AGGTGGCCGC TTCGATGCTT
GGCAACCGCA GCCTGACGCT GCCCAAGGGC ACAGCCTTCA CCTGCGCGCT GAAGACCAAG
GTGATCAGCG CCACCTCGGG CCTCGTCGGC TGCCAAGTCC AGCGCAATGT CTTCAGCGAC
GACGGCCGCG TGCTGCTGAT CGAGCGTGGC TCGCACCTTG ACGGTGAGTA CCGCATCGCC
TCGGTCCGGC CGGGCACGGT CCGCATCCCC GTGCTCTGGA CCCGCATCCG CACGCCGCTG
GGCGTGACGG TGGACATCGA CTCGCCCGGC ACCGGACAGC TCGGCGAATC CGGCATCGAC
GGCTACGTCG ACAACCGCTG GGGCGAGCGC ATCGGCGCGG CCATGCTGCT GTCGCTGATC
GACGACTCGG TGAAGCTGGT CATCCAGAAC CAGGCCAGCG ACAGGCAGGC CGACACCATC
GTGCTGCCGT CCACCACGGC CAACACCAGC AAGCTCGCCG AGAAGGTGCT GGACAGCACG
ATCAACATCC CGCCGCTGAT CTACCAGAAC CAGGGCGGCA TCGTCGGCAT CTACGTCGCC
CGCGACGTGG ACTTCTCGTC GGTGTATGAA CTGCGGCCGA CGGCCAGCGC GCCGCCTCGC
GAGGGCACGC AATGA
|
|---|
| Protein sequence | MTHDPSDPRD RDPDLGAEIE PDGSGISPLP GEPGIPDVAA RQRVSMSKKG LLAVALLVGS
LVAVAAVTIQ RFSASGKKAD EAESKLVRDK PTAATAEPRR LEMPPAPTAS AAVATAPRIP
ALTPTADELA EPIGVRRTGS AAPAPGGPKV VPPEDAPVLL VTTRPGALPP QGSSNRRMDA
GAPPDEGPTA AEPADANDPL AATSRNLQGY QRQLQGLLDN LTKTAALATG QATGQLPSGS
LLGGPPMAGT APIGAPPAGG GLFGGQLQGS STPKVAASML GNRSLTLPKG TAFTCALKTK
VISATSGLVG CQVQRNVFSD DGRVLLIERG SHLDGEYRIA SVRPGTVRIP VLWTRIRTPL
GVTVDIDSPG TGQLGESGID GYVDNRWGER IGAAMLLSLI DDSVKLVIQN QASDRQADTI
VLPSTTANTS KLAEKVLDST INIPPLIYQN QGGIVGIYVA RDVDFSSVYE LRPTASAPPR
EGTQ
|
|---|
| |