Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A1287 |
Symbol | |
ID | 4785009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | - |
Start bp | 1389797 |
End bp | 1390660 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640089853 |
Product | farnesyl-diphosphate farnesyltransferase |
Protein accession | YP_001020484 |
Protein GI | 124266480 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.200444 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0949052 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCCC AACAGTACGT GCAGGACAAG GCCGCTGCGA GCGGGTCGAG CTTCTACTAC GCCTTCCTGT TCCTGCCACC GCCGCGCCGC GCCGCCATCA CCGCGTTCTA CGCGTTCTGC CGCGAGGTCG ACGATGTCGT CGACGAAGTC TCCGACCCCG GCGTCGCGGC CACCAAGCTG GCCTGGTGGC GCAAGGAGGT GGCCGAGGCC TTCGCCGGTC AGGCGCACCA CCCGGTCCTG CAGGCCCTGA TGCCGCACGT GGCCGACTAC GGCATCCGTG CCGAGCACCT GAGCGCCGTG ATCGACGGCT GCGAGATGGA CCTCACCCAG ACGCGCTACC TCGACGACGT GACGCTGCGA CGCTACTGCC ACCTGGTGGC CGGCGTGGTC GGCGAGGTCG CTGCCAGCAT CTTCGGCTGC GAGCCCGGGC GCCCGCTGAG CGAGGGCACG CGACGCTATG CCCACACCCT GGGCCGCGCC TTCCAGCTCA CCAACATCAT CCGCGACGTC GGCGACGATG CGCGCCGCGG CCGCATCTAC CTGCCGGTGA GCGAGTTGCA GCGCTTCGAC GTGAAGGCGC ACGAGCTGCT CAAGCGCGAG GCGCCCTGGG GCTACAGCGA GCGCTTCACC TCGCTGATGA AGTTCCAGGC CGAGCGCGCG CACCGGTCCT ACGACGAGGC GTTCGCGGCG CTGCCCGCCG ACGAGCGCCG TGCACAGCGG CCAGGCCTGA TGATGGCGGA GATCTACCGC ACGCTGCTGC GCGAGATCGA GGCCACCGGC TTCCAGGTGC TGCACCAGCG CACCGCGCTG ACCCCGCTGC GCAAGCTGTG GCTGGCGTGG AAAACCAACT GGCGTGAAAG GTGA
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Protein sequence | MTPQQYVQDK AAASGSSFYY AFLFLPPPRR AAITAFYAFC REVDDVVDEV SDPGVAATKL AWWRKEVAEA FAGQAHHPVL QALMPHVADY GIRAEHLSAV IDGCEMDLTQ TRYLDDVTLR RYCHLVAGVV GEVAASIFGC EPGRPLSEGT RRYAHTLGRA FQLTNIIRDV GDDARRGRIY LPVSELQRFD VKAHELLKRE APWGYSERFT SLMKFQAERA HRSYDEAFAA LPADERRAQR PGLMMAEIYR TLLREIEATG FQVLHQRTAL TPLRKLWLAW KTNWRER
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