| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0657 |
|---|
| Symbol | |
|---|
| ID | 4784784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 692314 |
|---|
| End bp | 693276 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640089216 |
|---|
| Product | ribosomal large subunit pseudouridine synthase C |
|---|
| Protein accession | YP_001019854 |
|---|
| Protein GI | 124265850 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.422678 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGACACC TGACGGTCGG CGAAGACGGC GCCGGCCAGC GGCTCGACAA CTACCTCGTC
AAGACGCTCA AGGGCGTGCC GAAGACGCAC GTCTACCGCA TCATCCGCAG CGGCGAGGTG
CGGGTGAACC GGGGCCGCGC CGCCGCCGAC ACGCGGCTCG CGGCCGGCGA TGAACTGCGC
CTGCCGCCGG TGCGGATGGC CACCCCGGCC GAGCGCGAGG CTGCGCCGCC CCGCGAGTTC
CCGGTCGTTC ACGAGGACGA GCACCTGCTG GTGATCGACA AGCCGGCCGG CGTGGCCGTG
CACGGCGGCA GCGGCGTGAG CTTCGGCGTC ATCGAGCAGC TGCGCCGGGC CCGGCCGCAG
GCGAAGTTCC TGGAGTTGGT GCACCGCCTC GACCGCGAGA CCTCCGGCCT GCTGCTGCTC
GCCAAGAAGC GCAGCGCACT CACGCGTCTG CAGGACCAGT TCCGCGCGCG CGAGACCGGC
AAGACCTACG CCGCGCTGGT GCCCGGGGCC TGGCCGGCCC GGCACAAGGT GATCGACGCG
CCGCTGCACA AGTACCTCGA CGGGGCCGGC GAGCGCCGGG TGCGCGTCAC CGGCGCGGAC
GACGAGGACG GCCAACGTTC GATCACGCTG GTGCAGGTGG CCGCCGCCTA CGCCGGCTAC
ACCCTGCTCG ACGTGACCAT CAAGACCGGC CGCACCCACC AGATCCGCGT GCACCTCGCG
CACGCCGGCC ACGCCATCGT CGGTGACGAC AAATACGGCG ACTTCGCGCT GAACAAGGCC
TTCGCCCGCG GCGAGGCCGT GCCGGCGGTG AAGTTCGACC GCATGTTCCT GCACGCGCGG
CGGCTGCGCT TCGAGCACCC CGCGAGCGGC GAGACGATCG AGCTCGAGGC CGCCCTGCCG
GCAGAATGCC GGCTCCTCCT GACAGCCCTG CCGCGCGTCG CGGCCCCACC GCCCCCTCCA
TGA
|
|---|
| Protein sequence | MRHLTVGEDG AGQRLDNYLV KTLKGVPKTH VYRIIRSGEV RVNRGRAAAD TRLAAGDELR
LPPVRMATPA EREAAPPREF PVVHEDEHLL VIDKPAGVAV HGGSGVSFGV IEQLRRARPQ
AKFLELVHRL DRETSGLLLL AKKRSALTRL QDQFRARETG KTYAALVPGA WPARHKVIDA
PLHKYLDGAG ERRVRVTGAD DEDGQRSITL VQVAAAYAGY TLLDVTIKTG RTHQIRVHLA
HAGHAIVGDD KYGDFALNKA FARGEAVPAV KFDRMFLHAR RLRFEHPASG ETIELEAALP
AECRLLLTAL PRVAAPPPPP
|
|---|
| |