Gene P9303_29561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9303_29561 
Symbol 
ID4777820 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9303 
KingdomBacteria 
Replicon accessionNC_008820 
Strand+ 
Start bp2614605 
End bp2615735 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content53% 
IMG OID640088480 
Productputative type II alternative RNA polymerase sigma factor 
Protein accessionYP_001018951 
Protein GI124024644 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGAGCA GCCCCCAGCA AACCAAGACT TCCCTAGTCC GCAGAAGCGG CAGCACTGAT 
CCTGTGCGTC TCTACTTACA GGACATTGGA CGCGTAGAGC TACTGACCCA TGAAGAGGAA 
GTAACCCTGG CGCGACTTGT GCAGCGCAGG GAAGCCCTAC TCAAACAGGA AAGGCAACTG 
GCCTCCAGCC AAGAAGCGAT CAAAGAATTA CAAAGACTGG AGGAGTTACA GCAGCGAGAA 
GCGAACCATT CCTGCCACTG GCCCACCAAA CAGGAATGGG CTATGGCTGC TGGGCTCACC 
CTGGCCGAGC TGCAAGACAA AATCGAGACT GGTTACAAAA CCTGGGGAGC CCTGACTGGT 
CTTGACCCCT TGGAACTCAA GCGAAGTTTG CGAGCTGGTC GGCGTGCCAA GGATCAGATG 
ATCCAGGCCA ACCTTCGGCT TGTGGTGGCT GTAGCCAAGA AATATCAACA ACGGGGCATA 
GAACTGCTTG ATCTGGTGCA AGAAGGCACC CTGGGCTTGG AACGCGCAGT AGAGAAATTT 
GACCCGGCTA GAGGTTTCCG CTTCAGCACC TACGCCTACT GGTGGATCCG TCAGGGCATC 
ACAAGGGCCA TTGCGACGCA AAGTCGGACG ATCCGACTGC CGATGCACAT CACCGAAAAA 
CTAAACCGCA TCAAACGGGT TCAACAGGAG ATTGCTAGCA ACCAAGGACG ATTAGCTTCG 
ATTGCCGATC TCGCCAAGGC ACTTGGCCTT AGTGAAGAAA CAGTGCGCCT AACCCTAATG 
AGGGTCCCCC GTTCGATCTC CTTGGAAACT CGAATAGGCC AAGAACAAGA CAGCCAACTA 
GGCGATCTGC TGGAAGACAG CAACGCGACC CCAGAGGAGA AACTCACCCG CGATCAATTG 
CACAACGACC TTGAAATCTT GCTGGATGAA CTAAGCAACC GCGAAGCGAC AGTGATCAGA 
CGACGTTTTG GACTTGAAGA CGACACTCCT CAAACCCTGA CGCAAATTGG CGAGGCAATG 
CATCTATCGC GAGAACGAGT TCGTCAGATC GAAAGCCATG CCCTCTTGAA ATTGCGTCAA 
CCACAACGTC GCTGCAAGGT ACGGGACTAC ATTCAAAATC TCGATTCCTG A
 
Protein sequence
MKSSPQQTKT SLVRRSGSTD PVRLYLQDIG RVELLTHEEE VTLARLVQRR EALLKQERQL 
ASSQEAIKEL QRLEELQQRE ANHSCHWPTK QEWAMAAGLT LAELQDKIET GYKTWGALTG 
LDPLELKRSL RAGRRAKDQM IQANLRLVVA VAKKYQQRGI ELLDLVQEGT LGLERAVEKF 
DPARGFRFST YAYWWIRQGI TRAIATQSRT IRLPMHITEK LNRIKRVQQE IASNQGRLAS 
IADLAKALGL SEETVRLTLM RVPRSISLET RIGQEQDSQL GDLLEDSNAT PEEKLTRDQL 
HNDLEILLDE LSNREATVIR RRFGLEDDTP QTLTQIGEAM HLSRERVRQI ESHALLKLRQ 
PQRRCKVRDY IQNLDS