Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | P9303_28001 |
Symbol | rluD |
ID | 4777978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9303 |
Kingdom | Bacteria |
Replicon accession | NC_008820 |
Strand | + |
Start bp | 2465555 |
End bp | 2466529 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640088323 |
Product | putative pseudouridylate synthase specific to ribosomal large subunit |
Protein accession | YP_001018795 |
Protein GI | 124024488 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATTGG ACAAACGGAC ATTGGCGTTC GGAGAAGGTG AGGGTGAATT GCTGAAGCTG CACTACCCCA AACCCTTGCC AATGCGTCTG GATCGTTGGC TTGTGAGCCA ACGATCGGAG CAGAGCCGTT CACACATCCA AAAGTTTATT GAGGCAGGTC TTGTACGTGT AAACGGCATC ACCGGGAGAG CCAAGACTCC TTTGCGCCAA GGCGATGAGG TGCAGTTGTG GATGCCGCCA CCAGAACCTT TGCCGTATCT GCAACCGGAA GCAATGCACT TAGACGTGCT ATTTGAGGAT AGACATCTGA TCGTGATCAA CAAGCCTGCA GGCCTCACAG TGCATCCGGC TCCAGGCAAT CGAAACGGCA CGTTAGTGAA TGGTCTTTTG CATCATTGCT CTGATCTGCC TGGCATCAGT GGCAAGTTGC GACCAGGCAT CGTGCATCGT CTCGATAAAG ACACCACTGG CTGCATCGTG ATTGCCAAGA GTCAGGAGGC ATTGGTGAAA CTGCAGCAAC AGATTCAGAA ACGCATTGCA TCGCGCAACT ATTTGGCTGT CGTGCATGGC GCTCCGACAG GCGACCAAGG CACGATCGTG GCAGCGATTG GTCGCCATCC GGTGGATCGC AAAAAATATG CCGTGGTAAC TGAAGACGGA GGCCGTCATG CTTGCACCCA TTGGACGTTG GTTGAACGAT TAGGTGACTA TTCCTTGCTG CGTTTCCAAC TTGATACCGG GCGTACCCAT CAGATTCGTG TTCATTGCGC TCACATTGGT CATCCAATTG TTGGTGATCC CATTTACAGC CGCTGCCGCA AGTTGCCGAT CGATTTACCT GGCCAGATTC TTCACGCAGT GCAGCTTGGT TTAGACCATC CGCTCACGGG TGAGCGGATG GTCTTTGAGG CACCGTTGCC AGATCTATTT GAGAAGCTTC TGGCCGTGTT GCGTCGACGA ACATGCACAA CCTAA
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Protein sequence | MTLDKRTLAF GEGEGELLKL HYPKPLPMRL DRWLVSQRSE QSRSHIQKFI EAGLVRVNGI TGRAKTPLRQ GDEVQLWMPP PEPLPYLQPE AMHLDVLFED RHLIVINKPA GLTVHPAPGN RNGTLVNGLL HHCSDLPGIS GKLRPGIVHR LDKDTTGCIV IAKSQEALVK LQQQIQKRIA SRNYLAVVHG APTGDQGTIV AAIGRHPVDR KKYAVVTEDG GRHACTHWTL VERLGDYSLL RFQLDTGRTH QIRVHCAHIG HPIVGDPIYS RCRKLPIDLP GQILHAVQLG LDHPLTGERM VFEAPLPDLF EKLLAVLRRR TCTT
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