| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_19421 |
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| Symbol | rne |
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| ID | 4779501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 1594832 |
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| End bp | 1596754 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 640085232 |
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| Product | ribonuclease E/G |
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| Protein accession | YP_001015762 |
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| Protein GI | 124026647 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.839153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCAGC AAATTGTCAT TGCTGAGCAT TTGCGAATTG CCGCTCTGCT CACTGATGAG
AGAATAGATG AATTAATCGT CGCTCAAGGT AGCTACCAAA TCGGAGATAT TTTCTTAGGA
ACCGTTGAAA ATGTTCTTCC TGGGATAGAC GCTGCTTTTG TCAATATTGG TGAAAGTGAA
AAAAATGGCT TTATTCATGT AAATGATTTA GGTCCGCTTA GATTAAAAAA AGCAACTGCA
GGAATAACAG AGTTGCTCGA ACCAAGGCAA AAGGTTTTGG TTCAGGTAAT GAAAGAACCC
ACCGGGACAA AAGGGCCTAG ATTAACTGGA AACATAGCTC TTCCTGGTAG ATATCTAGTA
CTCCAACCTT ATGGACAAGG GGTAAATATT TCGAGAAGAA TAAGTACTGA AAGTGAAAGA
AATCGACTTA GAGCATTAGG AGTATTAGTT AAGCCTCCAA GTACTGGACT TTTAATAAGA
ACAGAAGCGG AAGATATTTG TGAAGAATTT TTAATTGATG ATCTTGAAAA TCTTCTTAAA
CAATGGGAGC TTATTCAACA AGCATCAGAG AGTTGCTCTC CGCCAATTCT TTTAAATAGA
GATGAAGACT TTATTCATAG AATTCTTCGA GATCATACAG GTCAAAATCT TACTGAGATT
GTTGTAGATA ATTCTGAAGC AATTGGTCGA GTTAAAAACT TCCTTGGCAA GGATAGTAAT
GAATTAACAA TAGAATTACA TAACGATTCG GAAAATATTT TGGAGAAATA CAAAGTAATA
TCTTCAATTA ATGAAGCATT AAAACCTAGA GTTGATCTAC CTTCGGGTGG CTATATAATA
ATAGAGCCAA CAGAAGCTTT GACAGTTATT GATGTCAACT CAGGCTCATT TACACGATCT
GCGAATTCCA GAGAAACAGT ATTATGGACT AATTGTGAAG CCGCTATTGA GATAGCAAGA
CAATTAAAAT TAAGGAATAT TGGTGGGGTT ATTATTATTG ATTTTATTGA TATGGATACA
AAAAGAGATC AACTTCAATT ATTAGAACAT TTTACATCTG CTATTAATGG AGACTCGGCG
CGGCCACAAA TAGCTTCACT TACAGAACTT GGACTTGTTG AGCTCACTAG AAAAAGACAA
GGTCAAAATA TATATGAATT ATTTGGAAAG ACTTCTCCTA ATTCTCAAGG GCAAGGTTAT
CTTCCAAGCA TTACTATTCA AGACATAAAT CCAACAACCC CATCTGAAGC TGGCGTAATC
AATGCAACTT TAATATCAGG CGAAGATATT CAATCTTTAC AAGAAACTAA TAACAAAAAA
AAGCGTATAA ATAAAACAAG AGATATAGAA GCAAACTTAA GCAATGAAGA AAATAAATCA
TCTACAGACA ACTCAAAAGC TATCTCCACG GATACAATTA CTGAAGATAT TCAAAAAGAG
AGTAATAATA AAAGGAAAGA AACAACGATA ATAAATATCA ATATGAATCA GAATGAAGAG
ATTGTATATA GTTTGATGGG ATTAGATCCT ATTTTACTTT TAGAGAAACC TCCACTATCT
GAAAACTATA AGGTTAATAT AATCAGACCT GGGAAAAAGG AAGCTAGAGA AGAAAAAAAT
AACATACCTG AGGATAATCA ACAAAAAATA GTTGATGATT CTATTAGCAA ACATCAAAAT
AATAACAAGG ATATTATTCG TCTTAAAAAC AAAAGTAATA TTGAACAAAA ATCAACCAAT
TCTGACGTAA AAGAGAGTAT TGAAGAAGAA AATATAAATG TAGCTTTGGA TCAAGAAACA
AATGAATTAA TAAATATTAA TCATAATTCA ATAAGCGAAA AGAATGAATT ACCTTCCACC
GATTCACAAG AAGTTAATGA GGATCCAAGA CGAAAAAGAA GAAGGTCTTC AGCCTCTTCT
TAA
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| Protein sequence | MPQQIVIAEH LRIAALLTDE RIDELIVAQG SYQIGDIFLG TVENVLPGID AAFVNIGESE
KNGFIHVNDL GPLRLKKATA GITELLEPRQ KVLVQVMKEP TGTKGPRLTG NIALPGRYLV
LQPYGQGVNI SRRISTESER NRLRALGVLV KPPSTGLLIR TEAEDICEEF LIDDLENLLK
QWELIQQASE SCSPPILLNR DEDFIHRILR DHTGQNLTEI VVDNSEAIGR VKNFLGKDSN
ELTIELHNDS ENILEKYKVI SSINEALKPR VDLPSGGYII IEPTEALTVI DVNSGSFTRS
ANSRETVLWT NCEAAIEIAR QLKLRNIGGV IIIDFIDMDT KRDQLQLLEH FTSAINGDSA
RPQIASLTEL GLVELTRKRQ GQNIYELFGK TSPNSQGQGY LPSITIQDIN PTTPSEAGVI
NATLISGEDI QSLQETNNKK KRINKTRDIE ANLSNEENKS STDNSKAIST DTITEDIQKE
SNNKRKETTI ININMNQNEE IVYSLMGLDP ILLLEKPPLS ENYKVNIIRP GKKEAREEKN
NIPEDNQQKI VDDSISKHQN NNKDIIRLKN KSNIEQKSTN SDVKESIEEE NINVALDQET
NELININHNS ISEKNELPST DSQEVNEDPR RKRRRSSASS
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