Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_18581 |
Symbol | ccdA |
ID | 4780432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | + |
Start bp | 1517728 |
End bp | 1518468 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640085147 |
Product | putative c-type cytochrome biogenesis protein CcdA |
Protein accession | YP_001015678 |
Protein GI | 124026563 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0785] Cytochrome c biogenesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.236803 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAAATC TCTTTTTGAA CATTTCTTCT ATAAGTTTAA TTTTCTCTGA TTTGACTCGT CATGGCGAGC AGCTAATTAA TAATGGGCTC AATAATCCAA CTCCCCTAAC AATTCTGATA GTTTTCTCCG GAGGGCTTTT GACTAGCTTA GGTCCCTGTT CACTGTCACT TTTACCAATC ACAGTTGCAT ATTTAGCTGG ATTTAAAAAT AACCAAAACC CTCTACAAAA AACGATTAGT TTCTGTAGCG GTATAGTTTT TTCACTAGTG GTATTAGGAA GTCTAAGCGG GTTTTTAGGA AAAATTTATG GTCAATTACC AGGTTTCTTC TCAATATTCA TTAGTTTTTT AGCAATAATT ATGGGTCTTA ATCTGCTTGG GATTTTGAAA TTCTCACTTC CATCTGGTCC TGACCCTGAA ATTTGGAAAA ACAAAGTTCC TTCCGCATTC GCACCAGTTT CAGCAGGTTT TGCTTTTGGA TTAGCCTCAT CGCCTTGCAC TACTCCTGTT CTTGCAGTTC TTCTCGCTTG GGTTGCTAAA CAAGGAAATC CTCTAAGCGG CACAATTTTT CTTGGAAGTT TTGCAATTGG ACAAATTGTT CCTTTATTTG TAGCAGGTAC ATTTGCAGCA AGTATTCCAA AATTATTATC GTTGCGACCT ATTGGAAAAT GGGTTCCACC AATTAGCGGA GTAATTTTGT TAACCATAGG TCTCATAAGC CTTCTTTCTA TTTGGATATA A
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Protein sequence | MANLFLNISS ISLIFSDLTR HGEQLINNGL NNPTPLTILI VFSGGLLTSL GPCSLSLLPI TVAYLAGFKN NQNPLQKTIS FCSGIVFSLV VLGSLSGFLG KIYGQLPGFF SIFISFLAII MGLNLLGILK FSLPSGPDPE IWKNKVPSAF APVSAGFAFG LASSPCTTPV LAVLLAWVAK QGNPLSGTIF LGSFAIGQIV PLFVAGTFAA SIPKLLSLRP IGKWVPPISG VILLTIGLIS LLSIWI
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