| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_17001 |
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| Symbol | trmD |
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| ID | 4780492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | - |
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| Start bp | 1384402 |
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| End bp | 1385628 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640084984 |
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| Product | putative bifuntional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001015520 |
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| Protein GI | 124026405 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase
[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.197185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAT TAAGATTCGA TGTCGTAAGC CTTTTTCCAG AAGCTTTTAA AAATTTTTTT
AATCATGGAC TAATAAAAAA AGCATTTGAA GAGAAGATTG CATCAATTCA TATACATAAT
CCTCGTGACC ACGCTATGGA TAATTATCGA AAAGTTGATG ATGAGCCATA TGGCGGAGGC
GCAGGAATGG TCTTAAAGCC AGAACCCTAC TTTTCGGTTT TTGATCAAAT TCCAAAGCTC
AATAAAAAAA GAATACTTTT GATGACTCCA CAAGGTAGAA AAATATCTCA ACCTGATTTT
TCTAGATGGT CAAAAGAAGA TCAACTCATA TTGATATGTG GTAGCTATGA GGGATTTGAT
GAAAGGATTA GGTCTTTAGC TGATGAAGAA ATTTCAATTG GAGACTTTGT TCTTACGGGT
GGAGAAATTC CTGCAATAAC TCTTATTAAT GGAGTTGTAC GTCTATTACC GGGAACTTTA
GGCAGTGCCG AATCATTAGA AGAAGAAAGT CATAATGAGT TTCTTTTAGA ACATCCCCAA
TACACCCGAC CTGCAGAATT TAGAGGTGTG AAAGTTCCTG ATGTCCTTTT AAGTGGTAAT
CATAAATTAA TTAGAGAATG GAGGCAGAAG CAAAGAGAAA TCAGGACGAA GTCACGTAGA
CCCGATTTGT TCGAACTTTG GAAGCTCGAC CAATTATCAT TTATTAAAAG AAGTTCATTA
TTGAAAACTG AAGTGAACTT ACGAATAGGC AACGGTTATG ACATGCACCG ATTGGTTTCT
GGACGACCTT TAATTCTTGG AGGGGTCGAG TTAAACCATC CAGAGGGTTT AGGCCTTGAT
GGGCATAGTG ATGCAGATGT TCTTACTCAT GCAATTATGG ACGCAATATT AGGTGCCTTA
TCATTGGGTG ATATTGGAAA GTATTTCCCT CCAGATGACC CTAAGTGGAA AAATGCAGAC
AGTTTAATTC TGCTTGGACA TGTCATGGAA TTAATTGAGA AGAAAGGTTG GCAAATTCAA
AATATTGATT CAGTTATTGT CGCTGAAAGG CCAAAACTAA AACCTTATAT TGACTTAATG
AAGGAGAAGA TATCTAAGAA AATAGGATTG AATATTGATG ATGTAGGAGT TAAAGCTACT
ACAAATGAGA AATTAGGTGC GGAGGGAAGA GAAGAGGGTA TATGTTGTCA TGCAGTTGTT
TTAATGAAAA GGAATGAAAA CTCTTAG
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| Protein sequence | MTKLRFDVVS LFPEAFKNFF NHGLIKKAFE EKIASIHIHN PRDHAMDNYR KVDDEPYGGG
AGMVLKPEPY FSVFDQIPKL NKKRILLMTP QGRKISQPDF SRWSKEDQLI LICGSYEGFD
ERIRSLADEE ISIGDFVLTG GEIPAITLIN GVVRLLPGTL GSAESLEEES HNEFLLEHPQ
YTRPAEFRGV KVPDVLLSGN HKLIREWRQK QREIRTKSRR PDLFELWKLD QLSFIKRSSL
LKTEVNLRIG NGYDMHRLVS GRPLILGGVE LNHPEGLGLD GHSDADVLTH AIMDAILGAL
SLGDIGKYFP PDDPKWKNAD SLILLGHVME LIEKKGWQIQ NIDSVIVAER PKLKPYIDLM
KEKISKKIGL NIDDVGVKAT TNEKLGAEGR EEGICCHAVV LMKRNENS
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