Gene NATL1_10061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNATL1_10061 
SymbolmetH 
ID4779773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL1A 
KingdomBacteria 
Replicon accessionNC_008819 
Strand
Start bp929634 
End bp933182 
Gene Length3549 bp 
Protein Length1182 aa 
Translation table11 
GC content33% 
IMG OID640084284 
Productputative methionine synthase 
Protein accessionYP_001014829 
Protein GI124025713 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0164665 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCACT TTTTAGACTA TCTAAACTCA GAGAAAAGAC CAATAATAGT CTTTGATGGT 
GCAACAGGCA CGTCTTTACA AGATCAACAA CTAACTGCAG ATGATTATGG TGGTGCTTCT
TTAGAAGGTT GTAATGAGAA TCTTGTTTTA TCCTCTGTCT CTAGTGTTGA GAAAGTACAT
CAGTCATTCT TAGAGGCCGG TTGTGATGTA ATAGAAACAA ATACATTTGG CGCAACTTCT
ATTGTTCTTG ATGAGTATGG AATTGGAAAC AAAGCTTATG AGATCAATTT CAAAGCTGCA
CAAATAGCAA GGAGAATTGC AAATAAATAT CAAACACCTG AAAAGCCAAG ATTTGTTGCT
GGTTCAATTG GTCCAACAAC AAAGCTTCCA ACTCTTGGTC ATATCAGTTT TGATGAATTA
AAAAAATCTT ATCTTGAACA AGCTAAAGCA CTGATTGAGG GTGGAATTGA TCTTTTTCTT
ATTGAAACTT GCCAAGATGT TTTACAAATA AAGGCAGCTC TGCAGAGCGT AAATGAGGCA
ATAGGTGATG GAATTAAAAT CCCAGTAATG GTATCTGTAA CCATGGAAAC TACAGGTCAG
ATGCTTATAG GTAGCGATAT TTCTTCCATA ACAACAATAT TAGAGCCTTT TAGTATTGAT
ATTTTGGGCC TTAATTGTGC TACTGGCCCA GAAGAAATGA AAGATCATAT TAAATACTTA
TCTGAGCATT CACCCTTTCA CATAAGTTGT ATTCCAAATG CTGGACTTCC TGAAAATGTA
GGAGGTAAGG CTCATTATCG ATTAACCCCA ATGGAACTTA AGTTCCAACT TAGTCATTTT
ATTAATGATT TAGGCGTTCA ATTAATTGGT GGCTGTTGTG GGACTAGGCC AGAACATATA
AAACAACTTT CAGATTTATC GCTTGAGCTT TTATCATCAG ATCGTAGATT GATTAACCTT
TCAAAGAAAA GATCTATAAT TCCAGCTGCA TCTTCAATTT ATGAGTCAAT TCCATATGAA
CAAGACAACT CATTTTTGAT AGTTGGCGAA AGATTAAATG CAAGTGGTTC AAAAAAGGTA
AGAGAGCTTT TGAATATTGA GGACTGGGAT GGTCTAGTTG GAATAGCAAA ATCACAACTT
AAGGAAAATG CGCATGTACT TGATGTAAAT GTTGATTTTG TTGGAAGAAA TGGCATAGAA
GATATGTCGA ACTTGGTTAA AAGATTAGTT AATAATATCA ATTTACCTTT GATGCTTGAT
TCAACGGATT ATGAAAAAAT GGAGAGTGGT TTAAAACGTG CTGGCGGAAA ATGTATTTTA
AATTCCACTA ACTATGAAGA TGGACAAGAT AGATTTCATA AAGTGATTGA TCTAGCTAAA
GAACATGGTT CAGCAGTTGT GATTGGAACA ATTGATGAAG ATGGAATGGC TAGAGCTGCA
GAAAAAAAAG CTGAAATAGC AACTAGGGCT TTTAAGGATG CTACAAATTC TGGGTTAAAA
CCCTATGAAA TTTTTTATGA TCCTTTAGCT TTGCCAATAT CTACAGGACT TGAGGAAGAT
AGAAAGAATG GTTTTGAAAC GATTAAAGCT ATTAAGTTAA TTAAAGATCG CCATCCACAA
GTACATTTAA TCCTAGGCAT TTCAAATGTA AGTTTTGGCC TATCATCTAG TGCGAGAGTT
GTCCTTAATT CTATCTTTCT AAATGAAGCA ATTAAGGCTG GATTAGATTC TGCAATTGTT
TCACCATCCA AGATATTACC TTTAAATAAA ATTAGTGAAG AAGAGATAAA AATATGTTTG
GATCTTATTT ATGACAAGAG AATTATAGAT AATAGTGTAT GCACTTATGA CCCCCTAACG
ACCCTAACTT CTTATTTTGA TGACTCGAAA AAAACTCTAA ATAATAGCTC AATTGATGAG
GATATTAATT TACCTATAGA AGATAAGTTG AAGAATCATA TTATTGATGG AGAAAAAACA
AATCTACATT CAAATCTTAA TTTAGCATTA AATAAATATA AGCCTTTGAT AATAATTAAT
GAATATTTAC TAGATGGAAT GAAAGTTGTC GGGGAATTAT TTGGTTCAGG GCAAATGCAA
TTACCTTTTG TACTTCAATC TGCAGAAACA ATGAAATATG CAGTTTCATA TTTAGAAGAT
TTTATGGATA AATCTGAGGT AAATCAATCA AAGGGTAAAT TTATTATAGC TACGGTCAAA
GGAGATGTTC ACGATATAGG AAAAAATTTA GTAGATATTA TTTTGTCGAA TAATGGGTAT
GATGTTATTA ATTTAGGAAT TAAACAAGAT GTCAATGCAA TTATAAAGGC ACAAAAAGAA
CACCATGCCG ATTGCATTGC AATGAGTGGT TTACTTGTAA AATCGACTGC CTTTATGAAA
GATAATCTTA AAGCTTTAAA TGAGGAAGAT ATTGATGTAC CTATTATTTT AGGTGGGGCA
GCATTAACCC CTAAATTTGT TAACCAAGAT TGCGCAAGTG TGTACAAGGG CAAGGTTATT
TATGGGAGAG ATGCCTTCAC TGATTTGAAA TTTATGGACG CATATATGAA AGCTAAATTA
GCTAATAATT GGAATAACAA AACAGGTTTT TCCGAAGGAG CTCCTGAGGG GATAACTATT
GGAACTTATA AAAGTTCTAA TTCTGATCCA AAAGTAATAA AAGAGAGTTT AGAGGTAAAA
AAAGTTAACG ACAATTCCAG ATCAAAAGAT ATATCTTCAG TAAAATCTAT TAAACCTCCA
TTTTTAGGCC CCAAGGTTTT ACTTGAAAAA GATATTGACT TATCCAATGT TTATAAATTC
TTAGACCGTA ATGCATTATT TGCTGGACAA TGGCAAATGA AAAGATCCAA AGACATGTCG
GCTTCAGATT ATAAAGAATT TCTTAAGCAA AAAGCTGAGC CAAAATTAGA TTATTGGATG
AATAAAATCA TAAATGATAA TCTTATCTCA CCATCTTTGG TATATGGATA TTTTCCATGT
GGGAGAGAAG GGAATTACTT AAATGTTTAT GACACTGATC ACAAATCTCT TTTAGGAAAA
TTTCTATTAC CCAGACAAAG ATCTGGAAAG AGATATTGTA TCGCAGATTT TTATAATGAC
TTAGTAGATA ATCATCCTTC TGATTATCTA CCTATGCAGG CAGTTACAAT GGGAGAAAAA
GCTAGTGACT ATTCCCATAA ATTATTTAGC CAAGACTCTT ATTCTGATTA TCTATATTTC
CATGGTTTAA CTGTACAATT AGCTGAAGCC CTAGCAGAAT ATATACACTC AATTATTAGA
ATAGAGTGTG GTTTTAAATA TGAAGAACCA GATAATATTA AAGATATATT GGATGTAAAG
TATAGAGGTT GTAGATACTC ATTTGGTTAC CCAGCTTGCC CAGAAGTATC AGATTCTAGA
AAGCAATTAG ATTGGCTAGA TGCAGATAAA ATTAATATAT CTATGGATGA AAGTGAGCAA
CTGCATCCAG AACAAAGTAC TACTGCAATT GTTGCATTAC ATCCAGTAGC TAAATACTTT
GGTATTTAA
 
Protein sequence
MTHFLDYLNS EKRPIIVFDG ATGTSLQDQQ LTADDYGGAS LEGCNENLVL SSVSSVEKVH 
QSFLEAGCDV IETNTFGATS IVLDEYGIGN KAYEINFKAA QIARRIANKY QTPEKPRFVA
GSIGPTTKLP TLGHISFDEL KKSYLEQAKA LIEGGIDLFL IETCQDVLQI KAALQSVNEA
IGDGIKIPVM VSVTMETTGQ MLIGSDISSI TTILEPFSID ILGLNCATGP EEMKDHIKYL
SEHSPFHISC IPNAGLPENV GGKAHYRLTP MELKFQLSHF INDLGVQLIG GCCGTRPEHI
KQLSDLSLEL LSSDRRLINL SKKRSIIPAA SSIYESIPYE QDNSFLIVGE RLNASGSKKV
RELLNIEDWD GLVGIAKSQL KENAHVLDVN VDFVGRNGIE DMSNLVKRLV NNINLPLMLD
STDYEKMESG LKRAGGKCIL NSTNYEDGQD RFHKVIDLAK EHGSAVVIGT IDEDGMARAA
EKKAEIATRA FKDATNSGLK PYEIFYDPLA LPISTGLEED RKNGFETIKA IKLIKDRHPQ
VHLILGISNV SFGLSSSARV VLNSIFLNEA IKAGLDSAIV SPSKILPLNK ISEEEIKICL
DLIYDKRIID NSVCTYDPLT TLTSYFDDSK KTLNNSSIDE DINLPIEDKL KNHIIDGEKT
NLHSNLNLAL NKYKPLIIIN EYLLDGMKVV GELFGSGQMQ LPFVLQSAET MKYAVSYLED
FMDKSEVNQS KGKFIIATVK GDVHDIGKNL VDIILSNNGY DVINLGIKQD VNAIIKAQKE
HHADCIAMSG LLVKSTAFMK DNLKALNEED IDVPIILGGA ALTPKFVNQD CASVYKGKVI
YGRDAFTDLK FMDAYMKAKL ANNWNNKTGF SEGAPEGITI GTYKSSNSDP KVIKESLEVK
KVNDNSRSKD ISSVKSIKPP FLGPKVLLEK DIDLSNVYKF LDRNALFAGQ WQMKRSKDMS
ASDYKEFLKQ KAEPKLDYWM NKIINDNLIS PSLVYGYFPC GREGNYLNVY DTDHKSLLGK
FLLPRQRSGK RYCIADFYND LVDNHPSDYL PMQAVTMGEK ASDYSHKLFS QDSYSDYLYF
HGLTVQLAEA LAEYIHSIIR IECGFKYEEP DNIKDILDVK YRGCRYSFGY PACPEVSDSR
KQLDWLDADK INISMDESEQ LHPEQSTTAI VALHPVAKYF GI