| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_09521 |
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| Symbol | secD |
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| ID | 4781059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL1A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008819 |
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| Strand | + |
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| Start bp | 876719 |
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| End bp | 878209 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640084229 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001014775 |
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| Protein GI | 124025659 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.1601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTAGAA AGAATTACTG GTTTCTTTTC GTTATCCTTT TTGCAATATT TAGTATTTTT
ATATGTACTA ATATTCCTTT TCAATTAGGA TTGGATTTAA GAGGAGGTAG TCAACTAACT
CTAGAGGTTC AGCCTACTAA GGAAATTACA AAAATTACTC CCAACGAAAT AGAAGGAGTT
AAGGCTGTTC TTGACAAGAG AGTAAACGGA TTAGGAGTTT CAGATTCTCA ACTTCAAACT
GTAGGAACAA ATCAATTATT ATTAGAACTG CCTGGGGAAC AAGATCCTTC TGGGGCAGCG
AAAGTATTAG GAGAAACTGC TCTATTAGAA TTCAGAATTC AGAAAAATGG TACAGCGGCT
CAATATAGAG ATCTACAAAC TCAACGAAAT AGTGTTGAAT CTATAATTAA CTTACTAGAA
GAGAATAATA ATTCAGCTCA GTTACTAAAG GAGATCAATA TTAACAATGA TATTAATCAG
TTATTCGAAA AATATAATAT TCAATCTGAC CAGATATTAG ATGTAGTTGA ATTTAATATT
TTAAGGAATA AAATAAGTAC TGAAATAGCA GGTCTTTTTG AACCAACATC ATTAACTGGA
CAGTATTTGA CAAACGCAGG AAGACGACAA GATCAAAATA CTAATAATTG GGAAGTTACT
TTAAGCTTCA ATAATGAGGG AGGAGAATTA TTTGCAGATC TCACAAAATC CATCGCTGGC
ACGTCTCGAT TGCTTGGAAT TGTTATTGAT GGGATCTCAT ATAGCGAAGC AAGTGTTGGT
AAGCAATTTG AAACTGCAGG TATTACTGGG GGAGCCGCGA CAATAAGCGG TAACTTTACT
GCGGATGATG CAAGAAATTT AGAAGTTCAA TTAAGGGGAG GTGCTTTACC ACTCCCTATT
GAGATTATTC AAATAAGAAC AATAGGTCCA TCTCTAGGTA CACAAAATAT TCGTTTAAGT
CTTTTTGCTG CTCTAACAGG CTTATTTTTT GTAGGTATTT TTATGATCTT TATCTATAAA
CTTGCTGGAT TTGTTGCTGT CTTGGCATTA TCTTGTTATT CGCTATTCAC TCTCTCTATT
TATGCACTAC TCCCAGTAAC TCTTACTCTC CCAGGTATAG CTGGATTTAT ATTAAGCATA
GGAATGGCGG TTGACGCTAA TGTTCTTATT TTTGAAAGAT TAAAGGAAGA ACTCCTTAAT
GGAAATACAT TGATTCGGTC AATAGACGCA AGTTTTAAAA ACGCTTTTTC ATCAATAATT
GATGGTCATT TAACTACTTT AATAAGCTGT ATAACGTTAT TCTATTTGGG AACTGGATTT
GTAAAAGGGT TCGCAGCCAC CTTAGGTATA GGGGTTATGT TGAGCTTATT TACTGCGTTA
ACATGTACAA AAGCAATTTT GAAGTTCCTA ATGAGTTTTC AAGGTCTTCG AAAAAGCTCT
AACTTTATTA ATGCTAGTCA GATTCCATCA CCCTCTATCA ACGTTCAATA A
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| Protein sequence | MGRKNYWFLF VILFAIFSIF ICTNIPFQLG LDLRGGSQLT LEVQPTKEIT KITPNEIEGV
KAVLDKRVNG LGVSDSQLQT VGTNQLLLEL PGEQDPSGAA KVLGETALLE FRIQKNGTAA
QYRDLQTQRN SVESIINLLE ENNNSAQLLK EININNDINQ LFEKYNIQSD QILDVVEFNI
LRNKISTEIA GLFEPTSLTG QYLTNAGRRQ DQNTNNWEVT LSFNNEGGEL FADLTKSIAG
TSRLLGIVID GISYSEASVG KQFETAGITG GAATISGNFT ADDARNLEVQ LRGGALPLPI
EIIQIRTIGP SLGTQNIRLS LFAALTGLFF VGIFMIFIYK LAGFVAVLAL SCYSLFTLSI
YALLPVTLTL PGIAGFILSI GMAVDANVLI FERLKEELLN GNTLIRSIDA SFKNAFSSII
DGHLTTLISC ITLFYLGTGF VKGFAATLGI GVMLSLFTAL TCTKAILKFL MSFQGLRKSS
NFINASQIPS PSINVQ
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