Gene NATL1_08551 details

Gene Information

• Locus tag: NATL1_08551
• Symbol: rfbC
• ID: 4779358
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. NATL1A
• Kingdom: Bacteria
• Replicon accession: NC_008819
• Strand: +
• Start bp: 784866
• End bp: 785447
• Gene Length: 582 bp
• Protein Length: 193 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 640084130
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_001014678
• Protein GI: 124025562
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.00159391
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGAATACA CAACACTAAG CAATGAAAAA GAAGAAATTG AGGGTCCCTT GCTTCTTACT 
CCAAATGTTT TCAATGATGA AAGAGGATAT TTTTACGAAA GTTGGAACGA AAAAATTTTT 
AATTCAATCT TAGGGAAAGA GGTCAGATTT AAACAAGATA ATATTTCTCA TTCAATAAAA 
GGAGTATTGA GAGGGCTTCA TTATCAATTA AAACCTGAGT CACAAGGGAA GTTAGTTCGA 
TGTAGTTATG GCTCAATTTT TGATGTTGCA GTTGACATTA GGAAAGAATC TAAAACCTTC 
GGTAAATGGC TTAGTGCAGA GCTTAGTTCC GAAAATAAAA AACAATTATG GATACCAGTT 
GGATTTGCAC ATGGATTTCT AACTATTAGT GATCATGCTG AAGTTAATTA CAAAGCAACG 
GGATTCTGGA ATAAAGACTG CGAACACTCT ATTCGCTGGA ATGACAAAGA CTTGAAAATA 
ACTTGGCCTA TAAAGGAGTT TGGCTTTGAA CCAGTCATTA ACGAAAAAGA TGCATCTGCT 
CCTTTCTTGA AAGAGTCAAT AATGAAAGGG AACATATTTT AA 

 

Protein sequence

MEYTTLSNEK EEIEGPLLLT PNVFNDERGY FYESWNEKIF NSILGKEVRF KQDNISHSIK 
GVLRGLHYQL KPESQGKLVR CSYGSIFDVA VDIRKESKTF GKWLSAELSS ENKKQLWIPV 
GFAHGFLTIS DHAEVNYKAT GFWNKDCEHS IRWNDKDLKI TWPIKEFGFE PVINEKDASA 
PFLKESIMKG NIF