Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_05091 |
Symbol | ispD |
ID | 4780903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | + |
Start bp | 464000 |
End bp | 464671 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640083784 |
Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
Protein accession | YP_001014336 |
Protein GI | 124025220 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.245946 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTAATTG CGGCGGCAGG AAGTGGGAGT CGAATGGGTG CTGATAGAAA TAAACTCCTT TTGAAGGTTG CAGGTAAGAC GGTTTTAGAA TGGACTTTAA AAGCAGCATT CGAGGCTAAA ACAATTTCTT GGATTGGAAT TATTGGACAA CCCAAAGATA AAAATCCCAT TTGTTCAATT CTTGATAACT CAGTAAAGGC AGTTCAATGG ATCAATGGAG GATCAACAAG ACAGCAGTCA GTTCAACTGG GATTAGCTGC CCTTCCAAAT GATGCAAAGT CTGTGCTGAT TCATGATGGA GCAAGATGCT TGGTGAGACC ATTCGTTTTT GATGAGATCT CAAAGATTGT TTCCAAGGGA CAATCTGTTA TTGCTGCTTC ACAAGTCACT GACACCATAA AAAAGGTTGA TATAGATGGT GAGATTATTG AGAGCCCTCC TCGCTCAGAT TTATGGGCTG CGCAGACACC TCAGGGTTTT CCAGTAAATA AACTGAAGCA TGCTCATAGT GAAGCAATCT CCAAAGGATG GAATGTAACC GATGATGCAT CCTTGTTTGA ACGTTTAGGA TTGACAGTGA AAATATATGA TGCGGGACCT TCAAATATTA AAGTGACAAC TCCATTTGAT CTCGTAATAG CAGAGTCTTT ATTGTCTACT TTAAAAGACT AA
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Protein sequence | MLIAAAGSGS RMGADRNKLL LKVAGKTVLE WTLKAAFEAK TISWIGIIGQ PKDKNPICSI LDNSVKAVQW INGGSTRQQS VQLGLAALPN DAKSVLIHDG ARCLVRPFVF DEISKIVSKG QSVIAASQVT DTIKKVDIDG EIIESPPRSD LWAAQTPQGF PVNKLKHAHS EAISKGWNVT DDASLFERLG LTVKIYDAGP SNIKVTTPFD LVIAESLLST LKD
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