Gene NATL1_02671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNATL1_02671 
SymbolspoT 
ID4779527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL1A 
KingdomBacteria 
Replicon accessionNC_008819 
Strand
Start bp244655 
End bp246991 
Gene Length2337 bp 
Protein Length778 aa 
Translation table11 
GC content38% 
IMG OID640083532 
Productguanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase 
Protein accessionYP_001014096 
Protein GI124024980 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAAAG TCACCTCTGC ACAAAATTCA AACCAGACAA ATACGGTCTG TGATGAATTT 
TTTGATGGCC AGCCACGACT TAGAACTCAT CAGATTAAAC ATATTGATGA TTATGAAATT
ATTTTGCCAG AATGGTTAAA AAATTGCATT GAAAATATCC CACCGGGAAT AGGCGCAAGT
TGCCCAAGAG ATTCTGAAGC ACTTTTAGTT GCTGCTTTTG ATCTTGCATA TCAATTACAT
AAAGGCCAAT TCAGAAAAAG TGGTGAGCCC TACATAACCC ATCCAGTTGC TGTAGCTGAC
TTATTAAGAG AAATTGGTGC AAGTGCTAGT GTAATAGCAG CAGGTTTTTT GCATGACGTC
GTCGAAGATA CAGACATCAC ACCAGAACAA CTCGAGGGTT ATTTTGGTAG TGAAGTTAGA
TATTTAGTTG AAGGTGTTAC TAAATTAGGC GGGATCCATT TTAACAATCG GACAGAAGCT
CAAGCAGAGA ACCTACGTAA AATGTTTCTA GCTATGTCTA GCGATATTCG AGTTGTACTA
GTTAAGCTTG CAGACAGACT TCACAATATG CGCACTATCA GTTACTTAGG AGAAGAAAAG
CAAATTCGAA TAGCTAGAGA AACAAGAGAA ATTTATGCTC CACTCGCTAA CCGCCTAGGA
ATAGGACGTT TAAAATGGGA ATTAGAAGAC TTAGCATTTA AACTTTTAGA ACCCGATCCC
TTCCGCGAGA TTCAACAACA GATAGCTAGT AAGCGTAGTG AAAGGGAGGA GAGATTGAAT
ACAACTGTTC AATTACTGAA AGATCGCTTG AACTCCGCAG GACTTCATCA ATGTGAAGTA
AGTGGTAGAC CAAAGCATTT ATATGGAATT TGGAGCAAAA TGCAAAGACA AAAAAAAGAG
TTTCATGAAA TTTTTGATGT AGCTGCTCTA AGAATTATTG TCTTAGATGT CGAGACATGT
TATCGAGCTC TTGCTGTTGT ACATGATACA TTCAGACCAA TACCTGGACG CTTCAAGGAT
TACATAGGCC TTCCTAAACC AAATGGCTAT CAGTCCCTGC ATACAGCTGT AATTGGCAGG
CACAGACCTA TTGAAGTACA AATTAGAACT CCAGAAATGC ATAGAGTTTC AGAGTTTGGG
ATTGCAGCTC ACTGGAAATA TAAGGAAGGA GGATCTCCAG CAAATCCTGA TTCAGAAAAA
TTCAATTGGT TGCGTCAATT AGTTGAATGG CAACAAGAAG ATGGTGTTAA TGATCATAAT
GACTACCTAG CATCAATCAA AGAAGATTTA TTTGACGAGG AAGTATTTGT TTTCACTCCA
AAAGGAGATG TCTTGGGATT AAGGAACCGT TCAACAGCCA TCGATTTCGC TTATCGCATT
CACTCTGAAG TAGGCAATCA TTGCAATGGG GCTAGAATTA ATGATCGTCT ATGTGTGCTG
TCAACACCTC TTGAAAATGG AGATTTTGTA GAAATTCTCA CTCATAAGAG TTCTCATCCA
AGCTTAGATT GGTTAAATTA TGTTGCCACA CCCACAGCTA GGAATCGCAT TAGGCAATGG
TATAAAAAAA GTCATCGTCA AGAAACAATA TCAAGAGGGA AGGAATTATT AGAACAAGAA
TTTGGTCGTA AAGGAATTGA CAATTTACTC AAAGGCCATG CGATAACAAA AGTTGCGGAG
AGATGTAATC TAAAGTCTAC GGAAGATTTA TTAGCTGCAC TTGGGTTTGG GGCCTTAACC
TTACATCAAG TAATTAATAG ATTCAGAGAA GAAATAAAAA TACTAAACCA AGTACCTGAG
ACCGAATTAA GTGATCTCGA GCTAGCAACC CAAATTGGAA CACAAGCAAA TTTAGCTTCA
AACAAATCTA AAGCTTCTCA AACAAAATAT TCACCCATAG TTGGACTAGA GGGACTTGAC
TATCGACTAG GGGGGTGTTG CAGTCCTTTA CCAGGAGAAG CAATACTTGG AACAGTTGCG
CTTGGCAATC ATGGTATCAC CATACATCGT ACTAATTGTG TCAATATAGA ATCAATACCT
AATAGCAGAA GACTATCAGT CCAGTGGAAT ACAAATGCAC GTATCAAAGA AGAAAAGTTT
CCTATTCAAT TAAGGATTGA AGTTATTGAC CGAGTAGGTG TACTTAAAGA CATATTAATG
AGACTTTCTG ATAGAGGTAT TAATGTAATC GACGCAAGAG TTCAGACTTC ACAGGGAAAG
CCTGCATGCA TAGATCTGAA AGTTGAGCTG GAAAGTGTTA ATCAATTAGA AATCACTATT
AACCAAATTC GTTCAATGGT TGATGTTTTA GATATTGCTA GAACATCATT TAATTAA
 
Protein sequence
MPKVTSAQNS NQTNTVCDEF FDGQPRLRTH QIKHIDDYEI ILPEWLKNCI ENIPPGIGAS 
CPRDSEALLV AAFDLAYQLH KGQFRKSGEP YITHPVAVAD LLREIGASAS VIAAGFLHDV
VEDTDITPEQ LEGYFGSEVR YLVEGVTKLG GIHFNNRTEA QAENLRKMFL AMSSDIRVVL
VKLADRLHNM RTISYLGEEK QIRIARETRE IYAPLANRLG IGRLKWELED LAFKLLEPDP
FREIQQQIAS KRSEREERLN TTVQLLKDRL NSAGLHQCEV SGRPKHLYGI WSKMQRQKKE
FHEIFDVAAL RIIVLDVETC YRALAVVHDT FRPIPGRFKD YIGLPKPNGY QSLHTAVIGR
HRPIEVQIRT PEMHRVSEFG IAAHWKYKEG GSPANPDSEK FNWLRQLVEW QQEDGVNDHN
DYLASIKEDL FDEEVFVFTP KGDVLGLRNR STAIDFAYRI HSEVGNHCNG ARINDRLCVL
STPLENGDFV EILTHKSSHP SLDWLNYVAT PTARNRIRQW YKKSHRQETI SRGKELLEQE
FGRKGIDNLL KGHAITKVAE RCNLKSTEDL LAALGFGALT LHQVINRFRE EIKILNQVPE
TELSDLELAT QIGTQANLAS NKSKASQTKY SPIVGLEGLD YRLGGCCSPL PGEAILGTVA
LGNHGITIHR TNCVNIESIP NSRRLSVQWN TNARIKEEKF PIQLRIEVID RVGVLKDILM
RLSDRGINVI DARVQTSQGK PACIDLKVEL ESVNQLEITI NQIRSMVDVL DIARTSFN