Gene NATL1_00001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNATL1_00001 
SymboldnaN 
ID4780657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL1A 
KingdomBacteria 
Replicon accessionNC_008819 
Strand
Start bp188 
End bp1348 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content32% 
IMG OID640083263 
ProductDNA polymerase III subunit beta 
Protein accessionYP_001013829 
Protein GI124024713 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTAA ATTGTTCTCA ATCTGAATTA AATAATGCTC TTCAATTGGT TAGTAGAGCT 
GTTTCTAATC GACCGACGCA CCCTGTATTA GCTAATGTTT TGCTCGCTGC TGATGAGGTA
ACTGGAAAAC TTCGCCTAAC TGGTTTTGAC TTAAGTTTAG GAATACAAAC TTCAATATCT
GCTTCTATAG AGAGCAGTGG TGCCATAACT TTGCCTGCTA AGTTATTTGG TGAAATTGTT
TCGAAATTAT CTAACGACTC ACCTCTAGTT CTGACATCAG ATGAAACTAG TCAACAAGTC
GAGTTGACTA GTAAAAGTGG AACGTATCAA GTAAGAGGGA TGGTGTCTGA TGATTTTCCT
GATTTACCTT TGGTAGAAAG CGGTAATTCA TTTAAATTGA ATCCATTATT ATTATCTAAT
GCAATTAAAT CAACTTTATT TGCAAGCAGT ACTGATGAGG CTAAACAATT ACTTACTGGT
GTTAATCTTA CTTTTGACGG ATATGGGATT GAATCTGCAG CAACTGACGG ACATAGATTA
GCTGTTCTTA ATTTAAATAA TATATTATCT GATTCAAAAG AGATAGATAG TTCTACTAAA
TTCGAAAAAT TTTCTATTAC ATTACCTTCC AAATCTTTAA GAGAAGTGGA AAAATTTTTA
AGTACTTGTG ATATTAGTCA GCCAATTAAT TTTTTTGTTG ATAAAGGACA AGTAGTTTTT
ATATCAGTAG AAGATATTAT AACTATAAGA GCTTTAGAAG GTTCTTATCC AAATTATTCG
CAATTATTAC CTGATACTTT TGAAAATGAA TTAGAGTTTG ATAGGAAAGA ATTTATATCT
TCATTAGAAC GAATTGCTGT TTTAGCAGAT CAGCATAATA ATGTTATAAA GGTAACGACT
GACGGCTCTG CAAATTTAAT CAAAATTAGT ACGGATGCCC AAGATATTGG AACAGGTTAT
GAGTCACTAC CTGTCTCTTA TAAAGGGGAT TCATTTCAAA TAGCATTTAA TGTTAGATAT
TTATTAGATG GACTTAAAGT CATAGATTCA AACTTGATTA AATTAAGTTG TAATTCTCCA
ACTACACCTG CGGTTTTCTC ACCTATTAAT AGTGACGTTA ATTTCACTTA TCTAGTAATG
CCCATACAAA TACGAAATTA A
 
Protein sequence
MKLNCSQSEL NNALQLVSRA VSNRPTHPVL ANVLLAADEV TGKLRLTGFD LSLGIQTSIS 
ASIESSGAIT LPAKLFGEIV SKLSNDSPLV LTSDETSQQV ELTSKSGTYQ VRGMVSDDFP
DLPLVESGNS FKLNPLLLSN AIKSTLFASS TDEAKQLLTG VNLTFDGYGI ESAATDGHRL
AVLNLNNILS DSKEIDSSTK FEKFSITLPS KSLREVEKFL STCDISQPIN FFVDKGQVVF
ISVEDIITIR ALEGSYPNYS QLLPDTFENE LEFDRKEFIS SLERIAVLAD QHNNVIKVTT
DGSANLIKIS TDAQDIGTGY ESLPVSYKGD SFQIAFNVRY LLDGLKVIDS NLIKLSCNSP
TTPAVFSPIN SDVNFTYLVM PIQIRN