Gene P9515_10941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagP9515_10941 
Symbol 
ID4719075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9515 
KingdomBacteria 
Replicon accessionNC_008817 
Strand+ 
Start bp964448 
End bp965455 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content33% 
IMG OID640080775 
Productnitrogen regulation protein NifR3 family-like protein 
Protein accessionYP_001011408 
Protein GI123966327 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family
[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.48953 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTCAG TTATAAAATT AAGAGGAAAA GGTTTATCTA GAATAATAAA TAGTAAAGTA 
ATGTTATCTC CACTAGCAGG AGTTACAGAT AAAGTATTTA GAAAATTAGT AAGAAAATGG 
GCTCCGGATT CTCTTCTATT TACTGAAATG ATAAATGCCA CAAGTTTAAA GGAAGGACAT 
GGCACTCAAA AAATTAAGCA ACTGGAATTA GAACAAGGTC CTATTGGAGT ACAGATCTTT 
GACAATAGAC CCTTTGCCGT TTCAGAGGCA GCTAAACTTG CTGAAGATTC CGGAGCATTT 
CTTATAGATA TAAATATGGG CTGTCCAGTA AAAAAAATCT CAAAGAAAGG GGGTGGAAGT 
GCTTTAATTA AAGATCGTTT ATTAGCTGTT GAATTAGTAA AGAGAGTTTC AAAAGCTGTT 
AAAATTCCAG TTACAGTAAA AACAAGACTT GGATGGGATA ATAAAGAAGA AAATATAGAA 
GAATTTCTAT TAAGTCTCCA AGATTCAGGT GCAACAATGA TAACCTTGCA CGGGAGGACA 
AGAAAAGAAG GGTTTTCAGG GGCAGCCGAC TGGGATATGA TTGGAAGAAT TAAAGAGCAT 
TTAGAAATAC CCGTTATTGC TAATGGAGAT ATAAAGACTC CTGAGGATGC ATTTAATTGC 
TTAAAAAAAA CAAATGCTGA TGGTTTAATG ATTGGGAGAG GCATACTTGG TTCTCCATGG 
AAAATAGGAG AGATAGATTA CGCAATTAAA AAAGTTAAAG GTTTTAAAGA ACCTAATGTT 
GAAGAAAAAC TACTGTTAAT TATTGAGCAT TTAGATGAAT TAATTAAAGA AAAGGGAAAT 
CATGGTTTAC TAATAGCCAG AAAACATATT TCTTGGACAT GTAAAAATTT CCAAGGAGCA 
AATAACCTTC GTAATGAATT AGTCAGAGCA ATCAACGTTA AGGAGGTTAA AGAATTAATA 
AATAAAACTA TAGAGAGACT AAAAACTGAT CAAACATTAT TAATATAA
 
Protein sequence
MSSVIKLRGK GLSRIINSKV MLSPLAGVTD KVFRKLVRKW APDSLLFTEM INATSLKEGH 
GTQKIKQLEL EQGPIGVQIF DNRPFAVSEA AKLAEDSGAF LIDINMGCPV KKISKKGGGS 
ALIKDRLLAV ELVKRVSKAV KIPVTVKTRL GWDNKEENIE EFLLSLQDSG ATMITLHGRT 
RKEGFSGAAD WDMIGRIKEH LEIPVIANGD IKTPEDAFNC LKKTNADGLM IGRGILGSPW 
KIGEIDYAIK KVKGFKEPNV EEKLLLIIEH LDELIKEKGN HGLLIARKHI SWTCKNFQGA 
NNLRNELVRA INVKEVKELI NKTIERLKTD QTLLI