| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_02971 |
|---|
| Symbol | lytB |
|---|
| ID | 4720170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | + |
|---|
| Start bp | 273513 |
|---|
| End bp | 274709 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640079962 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001010613 |
|---|
| Protein GI | 123965532 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACTC AAGCGATAAA ACACTCAGTA CAACATTCGG GAAGATATAA CCGCAAAGGT
TTTGAATCCC CTACTCAACG TGCTAAGGCT TTAGGAGAAT CATATCAAAG TGATTTAATT
GCATCAATAA GAGAAAATAA TTTTAGTTTT GAAAAAGGTA GGTTAAAGAT AAAACTTGCT
AAATCCTTTG GTTTTTGTTG GGGAGTTGAG AGAGCAGTTG CAATGGCCTA TGAAACGAGA
AGACATTATC CTAATGAGGA TATTTGGATG ACGAATGAAA TTATTCATAA TCCATCAGTT
AATAATCATC TCAGCAGAAT GAATGTAAAA ATAATTTCTG CAAAAAATGG GATAAAAGAC
TTTTCCTCAG TCTCAACTGG GGATGTTGTA ATTCTTCCTG CATTTGGAGC AACAGTTCAA
GAGATGCAAT TACTTCATGA AAAAAAATGT CAGATAATTG ATACTACTTG TCCTTGGGTT
TCTAAAGTTT GGCATACTGT TGAGAAGCAT AAAAAACACA CTTTTACTTC TATAATCCAC
GGGAAATATA AACACGAAGA AACTCTTGCG ACTAGATCCT TTGCAGGAAA TTATTTAGTT
GTTTTTGATT TAGATGAAGC TGAATATGTA TCTAACTATA TTCAAGGACA TGGTGATAAA
AATAAATTCA TGAATAAGTT TGCAAAAGCT TGTTCAGATG GATTTGATCC AGATGTTCAT
CTTGAGAGAA TAGGAGTTGC CAATCAAACA ACAATGCTAA AAAGTGAAAC AGAGGAAATT
GGTAAATTTT TTGAAAAAAC CATGTTAATG AAATATGGCC CAGCAAATAT AAATGATCAT
TTTTTAGCTT TTAATACTAT TTGTGATGCT ACAGAAGAAA GGCAAGATGC GATGTTTTCT
TTAGTTAATG AAGACTTGGA TATACTTGTA GTCATAGGAG GTTTTAACTC CTCGAATACG
ACTCATTTGC AAGAAATCGC AATAAGTAAT AATATCGAAT CTTTTCATAT TGATATTTCA
GATAGGATTT CTGTTGAGAA TAACTCTATT TGTCATAAAC CTCTCGAATC TGAATTGATT
TTGAAAAAGA ATTTTATTCC AGACGGTAAA ATTAAGGTAG GAATTACCTC GGGAGCTTCT
ACTCCTGACA AGATAGTTGC TGATGTTATT GAAAAATTAA TTGCTATTAC TCAATAA
|
|---|
| Protein sequence | MDTQAIKHSV QHSGRYNRKG FESPTQRAKA LGESYQSDLI ASIRENNFSF EKGRLKIKLA
KSFGFCWGVE RAVAMAYETR RHYPNEDIWM TNEIIHNPSV NNHLSRMNVK IISAKNGIKD
FSSVSTGDVV ILPAFGATVQ EMQLLHEKKC QIIDTTCPWV SKVWHTVEKH KKHTFTSIIH
GKYKHEETLA TRSFAGNYLV VFDLDEAEYV SNYIQGHGDK NKFMNKFAKA CSDGFDPDVH
LERIGVANQT TMLKSETEEI GKFFEKTMLM KYGPANINDH FLAFNTICDA TEERQDAMFS
LVNEDLDILV VIGGFNSSNT THLQEIAISN NIESFHIDIS DRISVENNSI CHKPLESELI
LKKNFIPDGK IKVGITSGAS TPDKIVADVI EKLIAITQ
|
|---|
| |