| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_02201 |
|---|
| Symbol | spoT |
|---|
| ID | 4720356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | - |
|---|
| Start bp | 200279 |
|---|
| End bp | 202588 |
|---|
| Gene Length | 2310 bp |
|---|
| Protein Length | 769 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640079883 |
|---|
| Product | guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase |
|---|
| Protein accession | YP_001010536 |
|---|
| Protein GI | 123965455 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGG CAACTGCGGA TTCAAAAGAG AGAAAAGAAA TTGAAGTATC AACAATCATT
GTGCCTGAAA ATAAAAATTA TGAAAGTGAA TCTTTGAAGT ATGAGATAAA AATTCCAAAT
TGGCTGCTTG AAAATATTCA AAACTATGAA CTATCAAATA ATAAAAATGA TTCTAATCAA
GATCTTATAG TCAAAGCTTT CAAGCTTGCT TACCAAGCTC ATAATGGACA ACTTAGGGCA
AGTGGTGAGC CATATATAAT TCATCCAATT GCTGTTGCAG ATCTTCTTAA AGAAATAGGG
GCAAGTTCAT CCGTTATTGC TGCTGGATTA TTACATGATG TAGTTGAAGA TACAGGAATA
GCTCTTTCGG AGATAGAAAT TAATTTTGGC TTAGAAGTAA AAGTACTTGT AGAGGGTGTA
ACTAAATTAG GTGGTATTCA CTTTAATAAT AGAACTGAAG CGCAAGCTGA AAATCTTAGA
AAAATGTTCT TAGCCATGGC AAGTGACATC AGAGTTGTTT TAGTTAAACT TGCAGATCGA
CTTCATAATA TGAGAACAAT TCAATGGCTT AATGAAGAGA GAAAAGAGAG AATTGCAAGA
GAAACGAGAG AAATATATGC ACCTTTAGCA AACAGGTTAG GAATAAATAG ATTCAAATGG
GAATTAGAAG ATTTGGCATT TAAATTTCTT GAACCAGATG AATATAAAAA TTTAAAAGAT
CAAATTGTAG TTAAAAGAAG TGATAGAGAA AAAAGATTAG ATAATACTCT AAATTTAATG
AAAGAAAATT TAGTCTCATC AGGTTTAAAA AATTTTGAAA TTACAGGAAG ACCAAAACAT
CTTTACGGTA TCTGGAGCAA AATGGAAAGA CAGCAAAAAC AATTTAGCGA GATTTATGAC
GTTGCTGCTT TAAGAATTAT TGTTAGCAAT TTAGATAGCT GTTATAAAGC TTTAGCAGTC
GTTCATGATA CTTTTAGACC AATCCCTGGA AGATTTAAAG ATTACATAGG CTTACCAAAA
CCTAATGGCT ACCAGTCCTT ACATACTTCT GTTATTGGCA AACATAGGCC TATTGAAGTT
CAAATCAGAA CAACTTCAAT GCATCAAATT GCAGAATTTG GAATAGCTGC ACATTGGCAA
TATAAAGAAG GTGGTTCGCC TGCATCTAGT AATGCAGAGA GATTTAATTG GCTTAGACAA
CTAGTAGAAT GGCAACAAGA AGGAAATGAG AAAGATCATA ATGACTATTT AGCATCAATA
AAAGAAGATT TATTCGATGA AGAAGTTTTT GTGATTACAC CAAAAGGTGA CGTTGTTGGT
CTAAGGAAAG GATCTACTGC AATAGATTTT GCTTACAGAA TACATTCAGA AATAGGTAAC
CATTGTAATG GGATAAGAAT CAATGAAAAG CTATCTCCTC TATCTACATC ACTACAAAAT
GGGGACTTTA TAGAAATTTT GACTAATAAT AATTCAACTC CAAGCCTAGA CTGGTTGAAT
TTTGTAGTTA CTCCAACCGC CAAAAATAGA ATTCGGCAGT GGTATAAGAA AAGCCATAGA
GATGAGACTA TCAAGCGAGG GAAAGACCTA CTTGAGAAAG AGATAGGTCG TAATGGATTT
GAATCTTTAC TTTCAAGTGA TGCAATGCAA AAAGTTGCTC ATCGATGCAA TTTAAAGACA
ACAGAAGATC TTCTCGCATC ATTAGGATTT GGTGGATTAA CTTTGCATCA AGTATTAAAT
CGACTAAGAG AAGAAATTAA AATACAAACA GAAGAAATTA AAAATGAATC CAATGCTGAA
ATAGCAAAAA CACTTGTCAA TAAAAATAAT TCAATAACAA CTAAATCTCA TGCAACTAAT
AAATCACCAA TCTCTGGGGT CGAAGGCCTA GATTATAGAA TCGGAAAATG CTGCAGTCCA
CTTCCCGGGG AGGAAATAAT TGGAACTGTC TCTTTAGGTA ATCATGGCAT CACTATACAT
AGAAGAGATT GCGAGAACGT TCTCCCAATA CCAATTGAGA GAAGATTACC TGTTGCATGG
AACCAAGAGA ATAAAGTTCT TGACAATAAG TTTCCAATTC AACTCAGAAT AGAAGTTATA
GATAGAGTAG GTGTCCTAAA AGATATTCTT ATGAGATTAT CTGATAAAGG AATAAATGTT
AGTGATGCAA ATGTAAAAAC CGCTTTTGGT AAACCTGCCA TAATTAATTT ATGTGTTGGT
CTAGAAAGTT ATAGCCAACT CCACAAAACT ATTGATCAAA TTAAATCAAT GGCTGATGTA
TTAGATATTG CGAGAGTAGG AATAAGTTAA
|
|---|
| Protein sequence | MSEATADSKE RKEIEVSTII VPENKNYESE SLKYEIKIPN WLLENIQNYE LSNNKNDSNQ
DLIVKAFKLA YQAHNGQLRA SGEPYIIHPI AVADLLKEIG ASSSVIAAGL LHDVVEDTGI
ALSEIEINFG LEVKVLVEGV TKLGGIHFNN RTEAQAENLR KMFLAMASDI RVVLVKLADR
LHNMRTIQWL NEERKERIAR ETREIYAPLA NRLGINRFKW ELEDLAFKFL EPDEYKNLKD
QIVVKRSDRE KRLDNTLNLM KENLVSSGLK NFEITGRPKH LYGIWSKMER QQKQFSEIYD
VAALRIIVSN LDSCYKALAV VHDTFRPIPG RFKDYIGLPK PNGYQSLHTS VIGKHRPIEV
QIRTTSMHQI AEFGIAAHWQ YKEGGSPASS NAERFNWLRQ LVEWQQEGNE KDHNDYLASI
KEDLFDEEVF VITPKGDVVG LRKGSTAIDF AYRIHSEIGN HCNGIRINEK LSPLSTSLQN
GDFIEILTNN NSTPSLDWLN FVVTPTAKNR IRQWYKKSHR DETIKRGKDL LEKEIGRNGF
ESLLSSDAMQ KVAHRCNLKT TEDLLASLGF GGLTLHQVLN RLREEIKIQT EEIKNESNAE
IAKTLVNKNN SITTKSHATN KSPISGVEGL DYRIGKCCSP LPGEEIIGTV SLGNHGITIH
RRDCENVLPI PIERRLPVAW NQENKVLDNK FPIQLRIEVI DRVGVLKDIL MRLSDKGINV
SDANVKTAFG KPAIINLCVG LESYSQLHKT IDQIKSMADV LDIARVGIS
|
|---|
| |