| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_14971 |
|---|
| Symbol | lpd |
|---|
| ID | 4718218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. AS9601 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008816 |
|---|
| Strand | - |
|---|
| Start bp | 1278166 |
|---|
| End bp | 1279605 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640079218 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_001009887 |
|---|
| Protein GI | 123969029 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.223464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTGATT CAAGTTTTGA TTTTGATTTA ATTGTAATAG GAGCAGGATA TGGAGGTTTT
GATGCCGCTA AACATGCTGC TGGTAAGGGG CTGAAAGTCG CAATAGTAGA ATCTTCTGAT
ATGGGAGGCA CTTGTGTTAA CAAGGGTTGT GTTCCCTCTA AAGCTCTTTT GGCTGCAAGT
GGAAAAGTTA GAGAAATAGC TGATTATGAA CATTTAGCTA AATTTGGTAT ACATGCTTCA
CCAGTAAGGT TCGAGAGATC AAAAATTGCA GATCATGCAA ATAATTTAGT TTTAAATGTT
AGAGAAAATT TAACAAAAAC TCTTAAAAGG AGTGGAGTTG AAATTATTTT GGGCATTGGA
AGAATTGAAG GAAATCAAAA AGTAGGTGTA AGAGATAAAA ACGGAATTGA TAAAATTTTT
ACATGTAAGA ATATTGTTAT AGCAACAGGC TCTTCTCCTT TTGTGCCCCG TGGAATAACT
TTGGATAATA GGACCGTATT TACTAGCGAT GATGCGGTTA AACTTGAGTG GCTTCCAAGA
TGGATAGCAA TTATTGGAAG TGGATATATA GGTCTAGAAT TTGCTGATGT TTATACCGCG
CTTGGTTGTG AAGTTACCAT GATTGAGGCT TTGGAGAATA TTATGCCAAC ATTTGATCCA
GACATCACTA AAATTGCCAA GAAGAACCTT ATTCAAGCAA GAGATATAGA CACAAAATCA
AATGTCTTTG CGACAAAAAT AACACCTGGA TGCCCTGTAA AAATAGAACT GACTGATGCA
AAATCTAAGG AAGTTGTAGA AACTTTAGAA GTTGACGCTG TACTAGTAGC AACTGGCAGA
AGTCCTAATA GTAATAACTT AAATCTTGAG TCGGTTGGTA TCGAAACAGT AAAAGGTTTT
ATTCCTGTAG ATGATCAAAT GAGAGTTAAG AATGGTGATG AAATAATACC TAACATTTGG
GCTGTTGGAG ATGTAACAGG CAAATTAATG CTAGCCCATA CAGCTGCAGC GCAGGGTACT
ATTGCTGTTG ATAATATTTG CGGTGGTAAT GTCGAAATTA ACTATAAAAG TATCCCCGCA
GCAACCTTTA CTCACCCAGA GATAAGTTCA GTTGGTCTCT CTGAAGTTGA AGCTAAAGAG
ATATCTACAA AAGAAAATTT TACTTTGGGA GTTGTCAAAA GTTTCTTTAA GGCTAATTCA
AAAGCATTGG CTGAATTAGA GAGTGATGGA TTGCTAAAGT TGATTTTCAA CAAAGATAAT
GGGAAAGTAT TAGGGGCTCA TATTTTTGGG TTACATGCAG CTGATTTAAT TCAAGAAATT
TCGAACGCTA TTTCAAGGAA CCAAGATGTA CTTGAACTAT CTAAAGAAGT TCATACTCAT
CCTACTCTTA GTGAAGTAGT GGAGGTCGCA TATAAACAGG CGGCTTCTCA AATAAAATAA
|
|---|
| Protein sequence | MTDSSFDFDL IVIGAGYGGF DAAKHAAGKG LKVAIVESSD MGGTCVNKGC VPSKALLAAS
GKVREIADYE HLAKFGIHAS PVRFERSKIA DHANNLVLNV RENLTKTLKR SGVEIILGIG
RIEGNQKVGV RDKNGIDKIF TCKNIVIATG SSPFVPRGIT LDNRTVFTSD DAVKLEWLPR
WIAIIGSGYI GLEFADVYTA LGCEVTMIEA LENIMPTFDP DITKIAKKNL IQARDIDTKS
NVFATKITPG CPVKIELTDA KSKEVVETLE VDAVLVATGR SPNSNNLNLE SVGIETVKGF
IPVDDQMRVK NGDEIIPNIW AVGDVTGKLM LAHTAAAQGT IAVDNICGGN VEINYKSIPA
ATFTHPEISS VGLSEVEAKE ISTKENFTLG VVKSFFKANS KALAELESDG LLKLIFNKDN
GKVLGAHIFG LHAADLIQEI SNAISRNQDV LELSKEVHTH PTLSEVVEVA YKQAASQIK
|
|---|
| |