| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_13341 |
|---|
| Symbol | psbD |
|---|
| ID | 4718053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. AS9601 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008816 |
|---|
| Strand | + |
|---|
| Start bp | 1108626 |
|---|
| End bp | 1109702 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640079053 |
|---|
| Product | photosystem II PsbD protein (D2) |
|---|
| Protein accession | YP_001009725 |
|---|
| Protein GI | 123968867 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01152] Photosystem II, DII subunit (also called Q(A)) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG CAGTTGGTAG CGCCCCACAA AGAGGATGGT TTGATGTCCT TGATGATTGG
TTGAAGCGCG ACCGCTTTGT ATTTATTGGT TGGTCCGGAC TACTCCTACT TCCTTGTGCA
TATCTTGCTA TAGGTGGTTG GTTCGTCGGA ACAACATTTG TTACCTCTTG GTACACACAT
GGAGTTGCAA GCTCATACCT TGAAGGTTGT AACTTTTTAA CAGCAGCTGT AAGTACCCCT
GGTGATGCCA TGGGACACAG TCTTCTATTT TTATGGGGTC CTGAAGCCCA AGGTAGTTTC
GTAAGATGGC TACAGCTTGG TGGTCTTTGG AACTTCGTTG CATTACATGG AGTATTTGGC
CTTATTGGTT TTATGCTTCG TCAGTTTGAA ATTGCTGGCC TTGTTGGAAT TAGACCTTAC
AACGCTTTAG CATTCTCAGC AGTAATTGCA GTATTTACAA GTATTTTCCT TATTTATCCT
TTAGGACAGC ATAGTTGGTT CTTCGCACCT TCATTCGGTG TTGCAGCAAT CTTCCGTTAC
ATTCTGTTCA TTCAAGGTTT TCATAATATT ACTTTAAATC CATTTCACAT GATGGGTGTT
GCTGGAATTC TTGGTGGTGC TCTACTTTGC GCTATTCATG GAGCTACAGT ACAAAACACT
TTGTATGAAG ATACAAGTAT TTATACAGAT GGTAAGGTTC AAAGTTCAAC ATTTAGAGCT
TTTGACCCAA CTCAAGAAGA AGAAACTTAT TCAATGATTA CAGCGAATAG ATTCTGGAGT
CAAATCTTCG GTATTGCTTT CTCAAACAAG CGTTTCTTAC ATTTCTTGAT GCTATTTGTA
CCTGTAATGG GTATGTGGAC ATCTTCAATT GGTATCGTCG GCTTAGCACT AAACTTAAGA
GCTTATGATT TCGTAAGCCA AGAAATTCGT GCAGCAGAAG ATCCAGAATT TGAAACTTTC
TATACAAAAA ATATACTTTT GAACGAAGGT ATGCGAGCAT GGATGTCTTC TGTGGATCAA
CCACACGAAA ACTTTGTATT CCCTGAGGAG GTTCTTCCAC GTGGAAACGC CCTTTAA
|
|---|
| Protein sequence | MTIAVGSAPQ RGWFDVLDDW LKRDRFVFIG WSGLLLLPCA YLAIGGWFVG TTFVTSWYTH
GVASSYLEGC NFLTAAVSTP GDAMGHSLLF LWGPEAQGSF VRWLQLGGLW NFVALHGVFG
LIGFMLRQFE IAGLVGIRPY NALAFSAVIA VFTSIFLIYP LGQHSWFFAP SFGVAAIFRY
ILFIQGFHNI TLNPFHMMGV AGILGGALLC AIHGATVQNT LYEDTSIYTD GKVQSSTFRA
FDPTQEEETY SMITANRFWS QIFGIAFSNK RFLHFLMLFV PVMGMWTSSI GIVGLALNLR
AYDFVSQEIR AAEDPEFETF YTKNILLNEG MRAWMSSVDQ PHENFVFPEE VLPRGNAL
|
|---|
| |