| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_09311 |
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| Symbol | secD |
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| ID | 4717638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. AS9601 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008816 |
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| Strand | + |
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| Start bp | 800688 |
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| End bp | 802157 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 640078644 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001009322 |
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| Protein GI | 123968464 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.483137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA GGCAAGGTTG GCTTTTTTTT ATTATATTTC TACTTACTTT ATCTGTTTAT
CTATTAATAA ATTATCCATT ACAGTTGGGA TTGGATTTAC AAGGGGGGTC TCAACTTACA
CTTCAAATTA TTAAAGAGGA AGGTAAGGTA ACAAGGGATG AACTTGAAGC AGTTAATTCG
GTTATAGATA AGCGCGTTAA CAATTTAGGA GTTTCTGAGT CTAATTTACA AACCCTCGGT
GGAGATCAAT TGATTTTAGA ATTACCAGGT GAACAAAATC CATTAGTTGC TTCAAGGGTA
TTAGGTAAGA CTGCTTTATT AGAATTTAGA ACCCAAAAAG AAGGAACATC TACAGATTTA
AAAACCCTGC AACTTCAAAG ATTGAGTATT AAAGAATTAA TTGAACAATA TTCCTTTGAA
GAAAAAAATC AAAATAATGT TAATTTCTTA AAAGTTATTC AAGATGATCT TAAAGATATA
GAGCAAGAAT TGAATTACTC ATCTACTAGT AATGATTTAT ATGGGAAGTT AATTGAAATC
AAAAAATATA TTGATAAAGA AATTACAAAT TTATTTATTA AAACAGATTT ATCTGGTAAG
GATCTTATTA ACGCAGGAAG GAGACAAGAA CAAACAAATA GTAATTGGGA AGTTTTATTA
ACTTTTAGTA ATTCTGGAGG TGAAAAGTTT GCAGAAATTA CAAAGTCAAT TGCTGGCACT
AATCAACTAT TGGCTATTAT TCTTGATGGC GAATCTATAA GTGAAGCTAG TGTTGGTAAC
CAGTTTTCTA GTACTGGTAT TACAGGTGGA TCAGCAACAA TAAGCGGTAA TTTTAGTGCT
GAAAATGCTA AAGAATTAGA AGTTCAACTT AAAGGAGGCT CATTGCCATT GCCAATTGAA
ATAGTAGAAA CTAACACTAT AGGGGCTCTA TTGGGATCCA AAAATATTTT AAAAAGTCTT
TATGCAGCTA TTAGTGGTTT AATTTTTGTT GGTATATTTA TGATTCTTAA TTATAGAATT
CTAGGTTTCG TTTCAGTTTT ATCTCTAGTA CTTTATGGTT TCTTTAACTT AGCCCTATAT
TCTTTAATTC CTGTAACTTT GACTTTACCT GGAATATCTG GGCTTATACT TAGCATTGGT
ATGGCTGTTG ATGCAAATAT TCTAATATTT GAGAGAATTA GAGAAGAATT ATATGAAGGA
AATACTCTTA CAAGATCTAT TGATAGCGGT TTTCAAAGAG CTAATTCATC TATAGTTGAT
GGTCATATTA CAACTCTTCT AAGTTGTTTT GTATTGTTTT TATTAGGAAC AAATTTTGTT
AAAGGTTTTG CGGCAACATT AGGTATTGGA GTTCTAATAA GCTTGTTTAC CTCATTAAAT
TGTTCTAAAA CTATTTTGCG ATTTTTTACA ACATATCAAT CTTTAAGAGA AAAAAATCTC
TATCTACCCA AGAATAATTT TTCAAATTAA
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| Protein sequence | MKRRQGWLFF IIFLLTLSVY LLINYPLQLG LDLQGGSQLT LQIIKEEGKV TRDELEAVNS
VIDKRVNNLG VSESNLQTLG GDQLILELPG EQNPLVASRV LGKTALLEFR TQKEGTSTDL
KTLQLQRLSI KELIEQYSFE EKNQNNVNFL KVIQDDLKDI EQELNYSSTS NDLYGKLIEI
KKYIDKEITN LFIKTDLSGK DLINAGRRQE QTNSNWEVLL TFSNSGGEKF AEITKSIAGT
NQLLAIILDG ESISEASVGN QFSSTGITGG SATISGNFSA ENAKELEVQL KGGSLPLPIE
IVETNTIGAL LGSKNILKSL YAAISGLIFV GIFMILNYRI LGFVSVLSLV LYGFFNLALY
SLIPVTLTLP GISGLILSIG MAVDANILIF ERIREELYEG NTLTRSIDSG FQRANSSIVD
GHITTLLSCF VLFLLGTNFV KGFAATLGIG VLISLFTSLN CSKTILRFFT TYQSLREKNL
YLPKNNFSN
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