| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A9601_05531 |
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| Symbol | |
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| ID | 4717252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. AS9601 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008816 |
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| Strand | - |
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| Start bp | 480292 |
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| End bp | 481476 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640078265 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001008946 |
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| Protein GI | 123968088 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCCAG TAGCAGCAGA ATCAAAGAAT TCCAAGCCTA GTTCAAAAAA AAAGATCAAT
AAAAAAATGA ATACAAATTT AGAAACAGTA GTTGAAGAAG ATATTAATAA AAATAATCAA
ACTTTACAGA CATCTTCTGA GTCAAACGAA AGCAATATTG AAAATAACAA TAATGAATTT
AGTGATTCTG AAGAAGAAGA TAAAGGGCTA GGGAATATAA AACTTGGGCC AAAGGGTATC
TACACTGAAG ATTCAATAAG AGTTTATCTC CAAGAAATTG GAAGAATTAG ACTTTTAAGA
CCAGATGAAG AAATTGAGCT TGCAAGAAAA ATTGCTGACT TACTCCAATT AGAAGAGCTA
GCAACTCAAT ATGAGTCAGA AAAAGGACAT TTCCCATCTG TAAGAGAATG GGCCGAGTTA
ATAGATATGC CTCTTGCCAA ATTTAGAAGA AGGCTTCTCT TAGGGCGGAG AGCTAAAGAA
AAAATGGTTC AATCAAATTT AAGATTAGTT GTTTCCATTG CTAAAAAATA TATGAACAGA
GGTTTATCAT TTCAAGATTT AATCCAAGAA GGAAGTTTGG GTTTAATTAG GGCAGCAGAA
AAATTCGACC ATGAAAAAGG TTATAAGTTC TCTACATATG CAACTTGGTG GATTCGCCAA
GCAATTACAA GAGCAATTGC GGATCAAAGT AGAACTATTA GATTGCCAGT TCACTTATAC
GAGACAATAT CCAGAATTAA AAAAACCACA AAAGTTCTTA GCCAAGAATT TGGCAGGAAA
CCTAGTGAAG AAGAAATCGC TGAGAGTATG GAAATGACAA TCGAAAAATT AAGATTTATA
GCTAAAAGTG CGCAACTTCC TATTTCTTTA GAAACTCCAA TAGGGAAAGA AGAAGACTCA
AGACTAGGGG ACTTTATAGA GGCTGATATA GAAAATCCAG AGCAAGATGT TTCCAAAACT
TTACTAAGAG AAGATTTGGA AGGAGTATTA GCCACTCTTA GTCCAAGAGA AAGAGATGTT
CTCAGATTGA GATATGGAAT TGACGATGGA AGAATGAAAA CTCTTGAAGA AATTGGCCAG
ATTTTTGATG TGACGAGAGA AAGAATTAGA CAAATAGAGG CAAAAGCTCT AAGAAAACTT
AGACATCCAA ATCGAAATGG GGTTTTAAAA GAATATATAA AATAA
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| Protein sequence | MCPVAAESKN SKPSSKKKIN KKMNTNLETV VEEDINKNNQ TLQTSSESNE SNIENNNNEF
SDSEEEDKGL GNIKLGPKGI YTEDSIRVYL QEIGRIRLLR PDEEIELARK IADLLQLEEL
ATQYESEKGH FPSVREWAEL IDMPLAKFRR RLLLGRRAKE KMVQSNLRLV VSIAKKYMNR
GLSFQDLIQE GSLGLIRAAE KFDHEKGYKF STYATWWIRQ AITRAIADQS RTIRLPVHLY
ETISRIKKTT KVLSQEFGRK PSEEEIAESM EMTIEKLRFI AKSAQLPISL ETPIGKEEDS
RLGDFIEADI ENPEQDVSKT LLREDLEGVL ATLSPRERDV LRLRYGIDDG RMKTLEEIGQ
IFDVTRERIR QIEAKALRKL RHPNRNGVLK EYIK
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