| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2364 |
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| Symbol | |
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| ID | 4709093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 2594084 |
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| End bp | 2596141 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639856839 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001003929 |
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| Protein GI | 121999142 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGATC GCAAGCGCGC CTTCCGCACC ACCATCCTCG CCCCGGTCTT CTTCCCCGCC
ATCGCTGTTG CGCTGCTGCT GATCATCGGG GCGATCAGCA GCCCGGACCT GGCCGGGGCG
TTCTTCGAGG ACTTGCTCGC CTTCATCACC GAGACCTTCG GCTGGTTCTA CATGCTGGCG
GTGGCGGCGT TCCTGGTCTT TCTGGTGGCG GTTGCCTTCA CCCGGTGGGG CCATATCAAG
CTCGGGCCGG AGCACGGCGA GCCGCAGTAC AGCTTCCCCG CGTGGTTCGC CATGCTCTTC
TCGGCGGGCT ACGGGATCGT GCTGCTCTTC TTCGGCGTGG CCGAGCCGGT GCTCCACTAC
GCCGATCCGC CCCGGGGTGA GCCGGAGACG ATTGAGGCGG CGCGCCAGGC GATGCAGATC
GCCTTCTTCC ACTGGGGCTT CCACATCTGG GCCATCTACG GCCTGGTGGG GTTGGTGCTG
GCGTACTTCT CGTTCCGCCA CGGCCTGCCG CTGTCGATCC GTTCGGCGCT CTACCCGCTG
ATCGGCGATC GCATCTACGG GCCCATCGGC CATACGGTGG ATGTCTTCGC CATCCTCGGC
ACGCTGTTCG GCATCGCCAC CACGCTGGGG CTGTCGGTGG CGCAGATCAA CGCCGGGCTC
AACTACCTGT GGCCGTCGAT CCCCACCAGC ACCACGGTGC AGGTCATCGT CATCGCGGTG
ATTACGGCGC TGGCGACCAT CTCCGTGGTC GCCGGCCTGG ACAAGGGCAT CAAGCGGCTG
TCGATCCTCA ACATGATCCT CGCCGCAGCG CTGATGCTCT TCGTCTTCCT GGTCGGCCCG
TCGATCCTGA TCGTGGAGAC CTTCCTGCAG AACACCGGCA GCTACGTCAG CGGCATCGTC
GAGCGCACCT TCAATCTCGA GGCCTACGAG CGGCGGGAGT GGATCGGCAA CTGGACGCTG
TTCATCTTCG GCTGGACCAT CGCCTGGGCG CCGTTCGTGG GCATGTTCAT CGCCAAGATC
AGCCGCGGGC GGACCATCCG CCAGTTCGTC GTCGGCGTGA TGCTGGTGCC GACGCTCTTC
ACCTTCCTGT GGTTCTCGAT CTTCGGCGGC ACCGGCCTGA ACCTGATCAT GAACGAGGGC
TACGAGCAGC TCATCGGCCT TGTGCAGGAG GACGAGGCGG TGGCCCTGTT CCAGCTCTAC
GACATCCTGC CGTGGAGTGC CCTGGCGTCG TTCGTCACCG TGATCCTGAT CATGACCTTC
TTCGTCACCT CGTCGGACTC CGGCTCGCTG GTCATCGATC AGCTCGCCTC CGGCGGCGCG
TCGGTGACGC CGGTCTGGCA GCGGGTCTTC TGGGCGGTGC TCGAGGGCGC GGTGGCGGCG
GTGCTGCTCA TCGCCGGCGG ATTGGCGGCG CTGCAGACCA TGGCGGTGAC CAGTGCCCTG
CCGTTCGCGG TGATCATGCT CATCGCTGCC GGTGGGCTAT GGCGGGCCCT GATCATCGAG
AGCCACCACG ACACCAGCCT GCAGAATCAC GTCCAGCGCC GCCAGCGCTA CGGTACGCTG
CTGTGGAAGA AGCGGCTCTA CGAGCTGTTC GACTTCCCCA CCCGCGACGA CGTGATGGCA
TTCATCCGCG GCCCGGTGGT GCAGGCCCTG GAGCACGTTC AGAAGGCCCT CGACCAGCGC
GGCTGGCCGG CCAAAGTGGT GCTCGATGAG GATCACGGAC GGGTCTACCT AGCGGTACAC
CGCGACGGGT TGATGGACTT CCTCTACGAC GTGCGCCTGA CCGAGCGCCC GCGTCCGGCC
TTCGCCTACC CGTCCATCGA TCCCTCGGGC GGACCGGCTG AGGTCTACTA CCGCCCGGAG
GTCTACCTGC GCCGGGGCGG GCAGTCGTAC AGCGTCTACG AGTACAACGA GCAGGAGATC
ATCGACGACG TCCTCGATCA CTTCGAGAGC TATCTGCAGT TCCTCGACTC GGCGCCGGCC
ACGCTGCCGT GGGCGACGGA GGCGCACGAC GAGATGATCG ACGCCCCGGT GGGTGGCAAG
GGCCGCGGAC GGGGGTGA
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| Protein sequence | MIDRKRAFRT TILAPVFFPA IAVALLLIIG AISSPDLAGA FFEDLLAFIT ETFGWFYMLA
VAAFLVFLVA VAFTRWGHIK LGPEHGEPQY SFPAWFAMLF SAGYGIVLLF FGVAEPVLHY
ADPPRGEPET IEAARQAMQI AFFHWGFHIW AIYGLVGLVL AYFSFRHGLP LSIRSALYPL
IGDRIYGPIG HTVDVFAILG TLFGIATTLG LSVAQINAGL NYLWPSIPTS TTVQVIVIAV
ITALATISVV AGLDKGIKRL SILNMILAAA LMLFVFLVGP SILIVETFLQ NTGSYVSGIV
ERTFNLEAYE RREWIGNWTL FIFGWTIAWA PFVGMFIAKI SRGRTIRQFV VGVMLVPTLF
TFLWFSIFGG TGLNLIMNEG YEQLIGLVQE DEAVALFQLY DILPWSALAS FVTVILIMTF
FVTSSDSGSL VIDQLASGGA SVTPVWQRVF WAVLEGAVAA VLLIAGGLAA LQTMAVTSAL
PFAVIMLIAA GGLWRALIIE SHHDTSLQNH VQRRQRYGTL LWKKRLYELF DFPTRDDVMA
FIRGPVVQAL EHVQKALDQR GWPAKVVLDE DHGRVYLAVH RDGLMDFLYD VRLTERPRPA
FAYPSIDPSG GPAEVYYRPE VYLRRGGQSY SVYEYNEQEI IDDVLDHFES YLQFLDSAPA
TLPWATEAHD EMIDAPVGGK GRGRG
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