| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2326 |
|---|
| Symbol | |
|---|
| ID | 4709283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2551145 |
|---|
| End bp | 2553544 |
|---|
| Gene Length | 2400 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639856801 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001003891 |
|---|
| Protein GI | 121999104 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.240337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAA GCCTCGTCAT CGTCGAGTCG CCTGCCAAGG CGCGCACGAT CAACAAATAC
CTGGGTTCCG ATTACGAGGT CATGGCCTCC TACGGCCATG TCCGCGACCT CGTCCCCAAG
GAGGGGGCGG TGGATCCGTC CAGCGGCTTC GCCATGAAGT ACGCACCCAT CGACAAGAAC
CAGAAGCACG TCGATGCCAT CGCCAAGGCG GCCCGCAAGG CCGACGCCCT CTACCTGGCC
ACTGACCCGG ACCGCGAGGG TGAAGCCATC TCCTGGCACC TGGTGGAGCT GCTGCGCGAC
AAGGGCACCC TGGACGACAA ACCGGTCTAT CGGGTGGTCT TCCACGAGAT CACCAAGGGC
GCCATCCAGG AGGCGATGAA CAACCCGCGG GACATCTCCG AGGAGCTGGT CAACGCCCAG
CAGGCGCGCC GCGCCCTCGA CTACCTGGTC GGCTTCAACC TCTCGCCCCT GCTCTGGCGC
AAGATCACCA GCGGCCTCTC CGCGGGCCGG GTGCAGAGCC CCGCGCTGCG GATGATCTGC
GAGCGCGAGA CCGAGATCGA GCAGTTCGAG CCCCAGGAGT ACTGGAGCGT CGAGGCCGAT
GCCGCCAAGG CGCAGCAGCC CTTCATGGCC AAGCTCTCGC AGCTCCACGG CGAGAAGGTC
CGGCAGTTCA CCATCACCGA CGAGACCCAT GCCCAGGAGG TCGACCGCAC CCTGCGCGAG
GCCGCGCGTG CCCAACCCGA CCCCGCCCGG ATCGGCCCCA CCGGCGATGG CGAGACCGAG
GTCATCGGCA CGCTGCGGGT CGCCTCGGTG GAGCGCAAGC AACGCCGGCG CAACCCGGCA
GCGCCATTCA TCACCTCGAC CCTGCAGCAG GAGGCCTCGC GCAAGCTCGG CTTCACCGCC
AGCCGGACCA TGCGCATCGC CCAGCAGCTC TACGAGGGCA TCGACGTCGG CGAAGGCAGT
GCCGTCGGTC TGATCACCTA CATGCGAACC GACTCGGTGA ACCTCTCCGG CGAGGCGATC
ACTGAGATGC GCCAGGCCAT CACCGACCGC TACGGCGCCG ACAAGCTCCC GGGCCAGGCC
CAGGTCTACA AGACCCGCTC GAAGAACGCC CAGGAGGCCC ACGAGGCCAT CCGGCCCACC
TCGGCGTCGC GCCACCCGGA CGATGTCCGC GCCTACCTCA ACGAGGAGCA GCGCAAGCTC
TACGATCTCA TCTGGAAGCG CGCCGTCGCC TCACAGATGA AGCACGCCAC CATCCACACG
GTGGCCGTCG ATCTGGCCGC CGACGCCGAC GCCCGCCATC TGCTGCGGGC CACCGGCTCC
ACGGTGGCCG ACCCGGGCTT CATGGTCGTC TACCGCGAGG GCAACGACGA GGGCAAAGAC
GACTCCGGCG AGAAGTTCCT GCCCGAACTC GAGGAGGGCG AGCAGGTGGA CCTGCACGCC
ATCCGCGCCG AACAGCACTT CACCGAGCCG CCGCCGCGCT ACACCGAGGC GAGCCTGGTC
CGCGCCCTGG AGGAGTACGG CATCGGCCGG CCGTCGACCT ACGCCTCGAT CATCTCCACG
CTGCAGAACC GCAACTATGT GGAGATGGAC GGCAAACGCT TCATCCCCAC CGACATCGGG
CGCACAGTCA ACAAGTTCCT GACCGAGCAC TTCGATCGGT ACGTGGACTA CGACTTCACC
GCCCGACTCG AGGACGACCT AGACGCCATC TCCCGCGGCG AGCAGGACTG GGTCCCGGTC
CTGGAAGCGT TCTGGGAGCC CTTCCGGGAG CGGGTTGAGG AGAAGAAGAA CGTCTCGCGC
CAGGAGGCGG TCCAGGCGCG GGAACTGGGC ACGGACCCGA AGACCGGCAA GCCGGTGACG
GTGCGCATCG GTCGCTACGG CCCCTTCGCC CAGCTCGGCT CCCGCGACGA CGACGAGAAG
CCGCGTTTTG CCGGCCTGCG CCCGGGACAG AGCATCGACA CCATCACCCT CGACGAGGCC
CTGCAGCTGT TCAAGCTGCC GCGGGACATG GGCGAGACCG ACGAGGGCGA AGACGTCCAG
GTCAGCATCG GGCGCTTTGG CCCCTACGTG CGCTACGGCA AGAAGTTCGT CTCCATCCCC
AAGGACGAGG ACCCGTACAC CATCACCAAG GAACGGGCCC ACGAACTGGT GCGGGAGAAG
AAACAGGCCG ACGCCAACCG GATCATCCAC GACTTCGGCG ACGGCATTCA GATCCTGCGC
GGACGCTACG GGCCGTACAT CACCAACGGC GAGAAGAACG CCAAGGTGCC CAAGGACCGG
GAGCCGGACT CGCTCACCCA TGAGGAGTGC CAGGACCTGA TCGCCAAGGC GCCGGCGCGC
AAGGGGCGCC GCGGCGGGGC GGCCAAGGGT GGCCGCGGCC GCAGCAAGGC CACTAGCTGA
|
|---|
| Protein sequence | MGKSLVIVES PAKARTINKY LGSDYEVMAS YGHVRDLVPK EGAVDPSSGF AMKYAPIDKN
QKHVDAIAKA ARKADALYLA TDPDREGEAI SWHLVELLRD KGTLDDKPVY RVVFHEITKG
AIQEAMNNPR DISEELVNAQ QARRALDYLV GFNLSPLLWR KITSGLSAGR VQSPALRMIC
ERETEIEQFE PQEYWSVEAD AAKAQQPFMA KLSQLHGEKV RQFTITDETH AQEVDRTLRE
AARAQPDPAR IGPTGDGETE VIGTLRVASV ERKQRRRNPA APFITSTLQQ EASRKLGFTA
SRTMRIAQQL YEGIDVGEGS AVGLITYMRT DSVNLSGEAI TEMRQAITDR YGADKLPGQA
QVYKTRSKNA QEAHEAIRPT SASRHPDDVR AYLNEEQRKL YDLIWKRAVA SQMKHATIHT
VAVDLAADAD ARHLLRATGS TVADPGFMVV YREGNDEGKD DSGEKFLPEL EEGEQVDLHA
IRAEQHFTEP PPRYTEASLV RALEEYGIGR PSTYASIIST LQNRNYVEMD GKRFIPTDIG
RTVNKFLTEH FDRYVDYDFT ARLEDDLDAI SRGEQDWVPV LEAFWEPFRE RVEEKKNVSR
QEAVQARELG TDPKTGKPVT VRIGRYGPFA QLGSRDDDEK PRFAGLRPGQ SIDTITLDEA
LQLFKLPRDM GETDEGEDVQ VSIGRFGPYV RYGKKFVSIP KDEDPYTITK ERAHELVREK
KQADANRIIH DFGDGIQILR GRYGPYITNG EKNAKVPKDR EPDSLTHEEC QDLIAKAPAR
KGRRGGAAKG GRGRSKATS
|
|---|
| |