Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_2126 |
Symbol | |
ID | 4709830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 2327270 |
End bp | 2328796 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639856600 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_001003692 |
Protein GI | 121998905 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.473632 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGGACTT CCGCCTGTGA GCGACGGTAT ACGGATGCTG CAAGCACGAC GGACACGGCC ATGAAGCAGT CGCTGCAGCT ACGCATCGGC CAGCAGCTGA CCATGACGCC CCAGCTGCAG CAGGCCATCC GGTTGCTGCA ACTCTCCAGC CTGGAGCTGC GCACCGAGAT CCAGCAGGCC CTGGAGTCGA ACTTCATGCT CGAGCTCGAC GAGGAAGGCG AGCTCGAGCA GCAGGAGCAG GAGCAACACG AGCAGCAGGA ACAAGAGGCC CGTGAGGACG AGGCCCCGGC CAGCGACCCT GCCGGCGACG ACATCCCCGA GGACCTACCG CTGGATACCT CCTGGGACGA CATCTACGAC GGCAGCACGG CGCTGAGCGC GCCGGGCGAC GAGGCGGCCC AACGCGACAC CCTGGACAAC CGGCCGGCCG CCTCCGACAG CCTGCAGCAG CACCTGCATG CACAGATCGA GCTGGAGGCG TTCTCCGCGC GCGAGCGCTC CATCGCCGAG GTCATCGTCG ACGCCGTCGG CGACGACGGC TACCTGACCC AGAGCACCGA CGACCTACTG GCCGGGTGCC CGGAGGATGA GCAGGTTGAC GCCGAGGAGC TCGAAGCGGT GCTGCAGCGC GTCCAGCGAC TCGACCCGAC CGGCGTCGCC GCCCGCGATC CCCAGGAAGC GCTGTGCGTC CAGCTCGAGC AGCTGCCCGA AGACACCCCG TGGCGGGAAG AGGCCCGCCA CGCCCTGCTC GAGCACCTGG GGCTGATCGC CGAGCGGCGA TACGACGACC TGGGCCGGGC TCTGGGGGTC AGCGACGAGG CCCTCGGCAG CATCCTCGGC CTGATCCAGA GCCTCGACCC CCGACCCGGC TCGCAGATTA GCGACACCAC GCCCGACTAC GTCATCCCCG ACGTTCTGGT GGTGCGCCGC GACGGCGCCT GGCAGGTCGA ACTCAACAGC GAAACCGCCC CCCGCTTGCG CGTCAACGCG TATTACGCCA GCCTGATCCG CAGGGCAGAC CGGAGCGCGG ACAACCACTG TCTGCGCAAC CACCTCCAAG AGGCGCGCTG GCTGATCAAG AGCCTGCGCA GCAGGAATGA GACCTTGCTC AAAGTGGCCA GCGCCATCGT GGAACGGCAA CAGGGTTTCC TCGACCACGG CGAGGAGGCG ATGCAACCAC TGGTCCTGCG CGAGATCGCC GAGGCGGTGG AGATGCACGA GTCCACCATC TCTCGCATCA CCACCAGCAA GTACATGCAC ACGCCCCGGG GCACCTTCGA GTTCAAGTAC TTCTTCTCAA GCCACGTGCA GACCAGCGAC GGCGGAGAGG CTTCGGCAAC GGCGATCCGG GCACGGATCC GCCGACTGAT TGCCGAAGAG GATCGGGCAA AACCGCTGAG TGACAGCGCG ATTGCGCGTA TCCTTCATGA GGAGGGGATC CAGGTGGCGC GTCGGACGGT CGCCAAATAC CGGGAGTCCC TGTCCATCGC ATCGTCGGCG GAGCGCAAGG AGGCCCGGAG GCGCTGA
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Protein sequence | MRTSACERRY TDAASTTDTA MKQSLQLRIG QQLTMTPQLQ QAIRLLQLSS LELRTEIQQA LESNFMLELD EEGELEQQEQ EQHEQQEQEA REDEAPASDP AGDDIPEDLP LDTSWDDIYD GSTALSAPGD EAAQRDTLDN RPAASDSLQQ HLHAQIELEA FSARERSIAE VIVDAVGDDG YLTQSTDDLL AGCPEDEQVD AEELEAVLQR VQRLDPTGVA ARDPQEALCV QLEQLPEDTP WREEARHALL EHLGLIAERR YDDLGRALGV SDEALGSILG LIQSLDPRPG SQISDTTPDY VIPDVLVVRR DGAWQVELNS ETAPRLRVNA YYASLIRRAD RSADNHCLRN HLQEARWLIK SLRSRNETLL KVASAIVERQ QGFLDHGEEA MQPLVLREIA EAVEMHESTI SRITTSKYMH TPRGTFEFKY FFSSHVQTSD GGEASATAIR ARIRRLIAEE DRAKPLSDSA IARILHEEGI QVARRTVAKY RESLSIASSA ERKEARRR
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