Gene Hhal_1996 details

Gene Information

• Locus tag: Hhal_1996
• ID: 4710295
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 2200755
• End bp: 2201441
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639856469
• Product: hypothetical protein
• Protein accession: YP_001003562
• Protein GI: 121998775
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1664] Integral membrane protein CcmA involved in cell shape determination

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.775695
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGACTCA TTGGCAAAGG GGATAAATCG AAGAGCCGAG GCCCTGGAAC GACAGTTATC 
TGCGACGGCA CGCGACTGGT CGGAGAACTG ACCCTGGAGT CGAACCTGCA TCTGGACGGC 
CAGATCAAGG GCACCATCGT CTCGGACCAC GACGTCAGCA TCGGTCATAC CGGCCGCTTC 
GAGGGCAATA TCAAGGCCCA TCGGCTGCTG GTCAGCGGCT ACGTCGAGGG GGTCATCGAC 
TGCGCCAGCC TGGAGATCGT CGCCGAGGGA CGGGTCTTCG GCGAGCTCCA CAGCGATGAC 
TTCATCATCG AGGCCGGCGG TCAGTTCCTC GGCGAGAGCC ACCCCCGGCG CGAGGTGCCC 
TTGGCGGCGC TGCAGCACGA GGGCAGCCAA GCCTCCCAGC TGACCGGTCC GGCACAGCCC 
GAGTCCGATT CGGAGGCGAC GCCCCACCCT GACCCGGCGG CGGGCGCTGC CACCCGCGCT 
GAACCCGAAG CGGACCCGCC GCAGCCCGAG AGGCCGGACC CGGCGCCACG CCAACACGCC 
GAGCCACCCC CGGACGACGC CTCCGGGACG ACCGACGAGC CAACCCCCGA CCCGGAGGAC 
GAACCGGAGC AGGAAGCAGA CTCCGAGCAG GAGCCATCCC GTCATTTCCG GCCCCAGCCC 
CGACAGACCT TCTGGGGACG ACGCTGA 

 

Protein sequence

MGLIGKGDKS KSRGPGTTVI CDGTRLVGEL TLESNLHLDG QIKGTIVSDH DVSIGHTGRF 
EGNIKAHRLL VSGYVEGVID CASLEIVAEG RVFGELHSDD FIIEAGGQFL GESHPRREVP 
LAALQHEGSQ ASQLTGPAQP ESDSEATPHP DPAAGAATRA EPEADPPQPE RPDPAPRQHA 
EPPPDDASGT TDEPTPDPED EPEQEADSEQ EPSRHFRPQP RQTFWGRR