Gene Hhal_1926 details

Gene Information

• Locus tag: Hhal_1926
• ID: 4710785
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 2120645
• End bp: 2122528
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 639856399
• Product: TonB-dependent receptor
• Protein accession: YP_001003492
• Protein GI: 121998705
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein
• TIGRFAM ID: [TIGR01779] TonB-dependent vitamin B12 receptor

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.201933
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAGCA ACACCACCAG CCGGGTCGCC GCGGGTGTGG CGGCCGGTCT TGCCGTAAGT 
GCCGGCCCGG CGATCGCCGA TACCGACGGG GAGTCCGCAC AACTCGCGCC CCTCGTGGTC 
ACGCCAACTC GAATGGCCCA GACCGTCGAT GAGTCCCTGT CCTCCGTCTC CGTCATCGAC 
CGCGAGCAGA TCGACCGCCA GCAGCCTCGG CAGGTCTCGG ATCTGCTGCA GGGTCAGGCG 
GGGTCGAGCC TGACGACGTC GGGTCCGTTC GGCAAGAGCA CCAGTCTGTT CATGCGCGGT 
ACCAACTCTG ACCATACCCT GTTGCTGGTC GATGGGGTGC CGATGAATTC GGCGACGCAA 
GGAGGGGCCG CCTGGCAATA TCTGCCTCCT GCCGAGATTG ACCGCATCGA GGTGGTGCGC 
GGGCCGCGCA CCAGCGTCTA CGGCGCCGAC GCCGTCGGCG GTGTGGTCCA GGTCTTCACC 
CGCCAGGGGG AGGAGGGCCC TCCGCGCTTC CGTGCCTTCG GCGGCGCCGG GTCGTTCAAC 
ACCCACGAAT TCGGTTTGGG TGTCTCTGGC GGGACTGCGG CTAGCCGCTA CGCCCTCTCG 
GCCAGCCACT ACGAGACGGA CGGGATCAAC GTCCAGGACG GTGAGGGAGA TGAGGACCCC 
GACGGCTTTG AGAACACCAG CTTCAGCGGC CGTTTCAGCC ATCGGCTACC CGGCGGTGCC 
GAACTCTTCG CGACGGGGTT CCGCTCAGAG GGTACAAACG AGTTCGACGG GACAAGACTT 
GGCGAAGAGG ACTGGACGGA TCACTACTTC CAGGCCCTCC GTGGCGGCGT CCGCGGGGAC 
CTCACCGAGC GCTGGTTCAG CGAGCTGGCG GTCTCCCAGG CGAAGGATGA GCAGGATAAC 
GTCGATAGCC GGGGAGAGAC ATGGCAGTAC ACTGAACGCC ACGAGGTAAG TTGGCGGAAT 
GAGCTGTATT GGGGCGCCGG GCATGTCTGG GCCTTTGGCG GTGACTGGCG AGATGAGAAA 
GTCGACACCG CCGACGATTA TGACGAAACC AGCCGGTACA ACGCCGGTGC GTATTCGCAG 
CTCGAGTTGG ATTTAGGCCG ACATGACCTC GGTGCCAGCC TGCGTTACGA CGACAACGAG 
GCTTACGGTG ACAACGTGAC CGGTCAGGTC GCCTGGGGCT TTGACGCAAC GGATCGACTT 
CGGCTGCGTT CGAGCTACGG CACGGCTTTC AAGGCGCCGA CATTCAACGA CCTGTATGCA 
CCTGAAAACC CGAATTGGTT GCTTGCCGGA GGAAATACGG ACCTTGAGGC CGAGACGTCC 
GCTTCTGCGG AGGTGGGTGC ACGCTGGCAG GTCAGAAGGG GCTATGTGGA TGCAGCGCTG 
TTCCGGACGG ACATCGACAA TTTGATCGCT GATAAGCCAG TGGATGGTCA GCAGGATTGG 
ACGCAGCCTG GCAATGTCGA AGAGGCCCGC ATCCGCGGTG CCGAGCTGGA GGCGGGGGCG 
CACTGGCAGG AATGGCAGTT TTCTGGCGCG TTCACCTACC TCGATCACGA GGACCGGGAG 
ACGGGTGAGG AGTTGCTTCG GCGCCCGAGT GAGTCGTTCC GATTGGAAAT CGATCGCGAG 
CTGGGGGATT TTTCCTTGGG GGCCACTGGC CTGCTGCGGG GGCGAAGCTA TGACACCGAT 
TTTGATATGG CTACCAGTCA GTCGGAACGC GTGCGCCTCT CCGGCTACGG CCTCCTCAAT 
CTCCGCACCA GCTACGCCAT CACCCCGGAG TGGACCCTGC GCGGGACGCT GGAGAACGCC 
CTGGACAAGG AGTACGAGAC GGTGGGCGGC TACAACCAGC CGGGGCGGGC GGTGTACGTC 
TCGCTGCACT TCAATCAGCA GTAG 

 

Protein sequence

MPSNTTSRVA AGVAAGLAVS AGPAIADTDG ESAQLAPLVV TPTRMAQTVD ESLSSVSVID 
REQIDRQQPR QVSDLLQGQA GSSLTTSGPF GKSTSLFMRG TNSDHTLLLV DGVPMNSATQ 
GGAAWQYLPP AEIDRIEVVR GPRTSVYGAD AVGGVVQVFT RQGEEGPPRF RAFGGAGSFN 
THEFGLGVSG GTAASRYALS ASHYETDGIN VQDGEGDEDP DGFENTSFSG RFSHRLPGGA 
ELFATGFRSE GTNEFDGTRL GEEDWTDHYF QALRGGVRGD LTERWFSELA VSQAKDEQDN 
VDSRGETWQY TERHEVSWRN ELYWGAGHVW AFGGDWRDEK VDTADDYDET SRYNAGAYSQ 
LELDLGRHDL GASLRYDDNE AYGDNVTGQV AWGFDATDRL RLRSSYGTAF KAPTFNDLYA 
PENPNWLLAG GNTDLEAETS ASAEVGARWQ VRRGYVDAAL FRTDIDNLIA DKPVDGQQDW 
TQPGNVEEAR IRGAELEAGA HWQEWQFSGA FTYLDHEDRE TGEELLRRPS ESFRLEIDRE 
LGDFSLGATG LLRGRSYDTD FDMATSQSER VRLSGYGLLN LRTSYAITPE WTLRGTLENA 
LDKEYETVGG YNQPGRAVYV SLHFNQQ