Gene Hhal_1696 details

Gene Information

• Locus tag: Hhal_1696
• Symbol: secD
• ID: 4709934
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 1852345
• End bp: 1854201
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 639856163
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001003262
• Protein GI: 121998475
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATCGCT ATCCGCTCTG GAAATACCTG CTGGTGGTCG CCGTCCTGGT GGTCGGCGGC 
CTCTTCGCGC TGCCCAACCT CTTCGGTGAG GATCCCTCGG TGGTGATCAC CACCGGCGAC 
GACGAGGTAC CGAGCGAGGA AGTCCAGTCC GACGTCCTCG GCTTCCTCGA GGAAGAGGGC 
TACAAGCCGC TCTCCGCCGA GGTACTGGAG GGGCAGTGGG TGCTTCGCTA CGGCTCCACC 
GACGAGCAGA TGCGGGCCTC GGACCTGATC TCGGCCAAGC TCGACCGAGA GTACTCCGTG 
GCCATGACGC TGGTGCCGGC GACCCCGCAG TGGCTGCGCG CCATGGGGGC GGAACCCATG 
TTCCTCGGCC TTGATCTGCG CGGCGGCGTG CACTTCCTGC TTCAGGTCGA TATCGACGCC 
ATGGTCGGCG AGACCATGGA GGGGCACCAG CAGGATATCC GGACGCTGTT CCGGGAGGAG 
CGGATTCGCT TCTCGGCGCT GGAGGTGACC GACGAGCAGC AGATCCGCAT GGCGTTTGCC 
GACACGGACC TGCGCGCGCG GGCCCTGGAG GCGCTCGAGG AGCATATCGA GGGCCTGAAC 
TACAGCGAGG AAGAGGACGA AGACACCTAC ACCCTGATCG CCTCCATGGA CGAGGAGGAG 
CTTCAGGAGA TGAAGGACCT GGCGGTCCAG CAGAACATCA CCACGCTCCG CAACCGCGTG 
GACGAGCTGG GTGTCGCCGA GCCGGTGATT CAGCGCCAGG GCGCGGATCG CATCGTGGTC 
CAGCTGCCCG GTATTCAGGA CCCCGGGCAG GCCAAGGAGA TCCTCGGCGC CACAGCGACC 
CTGGAGTTTC GGTTTGTCGA TCACGCCAAC TTCCCCTTCA CCGGCGATCC GGACGATCCG 
CCGGAAGGCT CCGAGGTCTT CCCTCAGCGC GATGGCGGCT ATGTCGCGCT CGAGCGCCAG 
CGCATCCTCT CCGGCGATCG CATCATCGAT GCCTCCTCCG GGTTCGATCA GGAGAGTGGT 
TCGCCCGAGG TGAACATCCG ACTGTCCGGA ACCGGCGGGC GCATCATGAA CCGGGCCACC 
CGGGACCGGG TCGGCGACCA TATGGCGGTG CTCTTCCAGG AGCGGATCTC CGAGACGCAG 
ATGGTCGACG GCGAGCCGGA GCGGGTGATC CGCGAGCTTG AGGAGGTCAT CTCGGTCGCG 
CGGATCCGCG AGGGGCTGGG TAGTCGCTTC CGCATCACCG GGCTCGATTC CAGCCAGGAG 
GCCAGTAACC TGGCCCTGCT GCTGCGCGCC GGTGCCCTGG CCGCGCCCAT CGACATCGTC 
GAGGAACGCA CCATCGGGCC GAGCCTGGGT GCCGAGAACG TCGAGCGGGG CTTCATGGCG 
GTGGTGATCG GATTCCTGCT GGTGATCGCC TTCATGGCGC TCTACTACCG CACCTTCGGT 
CTGGTGGCTA ACCTGGCGCT GCTCAGCAAT CTGGTGATCA TCGTCGCCGT GCTCTCCATG 
CTGCAGGCGA CCCTGACGCT GCCGGGCATC GCCGGGATCG TGCTGACCGT GGGGATGGCG 
GTGGACGCCA ACGTGCTCAT CTTCCAGCGC ATCCGCGAGG AGCTGAAGGC CGGTGCGCCG 
ATCCAGACCG CCATCGATGC CGGCTACGGC AAGGCGCTGT CGACCATCGC CGACGCCAAT 
GTCACCACGC TGATCGCCGC CCTGGTGCTG TTCCTCTTTG GCACCGGACC GGTCCAGGGC 
TTCGCCGTGA CGCTGGCCAT CGGTCTGGCC ACGTCGATGT TCACCGCCAT TGTCGGCACG 
CGGGCCGTGA TCAACCTGAT CTACGGCGGG CGCAAGGTCT CGGAGCTCAA GATCTAG 

 

Protein sequence

MNRYPLWKYL LVVAVLVVGG LFALPNLFGE DPSVVITTGD DEVPSEEVQS DVLGFLEEEG 
YKPLSAEVLE GQWVLRYGST DEQMRASDLI SAKLDREYSV AMTLVPATPQ WLRAMGAEPM 
FLGLDLRGGV HFLLQVDIDA MVGETMEGHQ QDIRTLFREE RIRFSALEVT DEQQIRMAFA 
DTDLRARALE ALEEHIEGLN YSEEEDEDTY TLIASMDEEE LQEMKDLAVQ QNITTLRNRV 
DELGVAEPVI QRQGADRIVV QLPGIQDPGQ AKEILGATAT LEFRFVDHAN FPFTGDPDDP 
PEGSEVFPQR DGGYVALERQ RILSGDRIID ASSGFDQESG SPEVNIRLSG TGGRIMNRAT 
RDRVGDHMAV LFQERISETQ MVDGEPERVI RELEEVISVA RIREGLGSRF RITGLDSSQE 
ASNLALLLRA GALAAPIDIV EERTIGPSLG AENVERGFMA VVIGFLLVIA FMALYYRTFG 
LVANLALLSN LVIIVAVLSM LQATLTLPGI AGIVLTVGMA VDANVLIFQR IREELKAGAP 
IQTAIDAGYG KALSTIADAN VTTLIAALVL FLFGTGPVQG FAVTLAIGLA TSMFTAIVGT 
RAVINLIYGG RKVSELKI