Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_1679 |
Symbol | |
ID | 4709909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | - |
Start bp | 1831992 |
End bp | 1833764 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639856146 |
Product | DNA polymerase III alpha subunit-like protein |
Protein accession | YP_001003245 |
Protein GI | 121998458 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0065962 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACGACG ACGCCACGAC CATCGTTCCG TTCCGTGGGG GCGCGCTGGA GCGCGCCGCC TGGGATCGGC TTTGGGATGC CGCCGATGGT GGCTGCGTGC GCCGGGCCCT CGGCGAGCGG CGTACGCGCT ACCAGCGGCG CGTCGAGCAG GAGATGGCAG CCTTTGCACG CCTGGGTCTG GAGCCGGGGG TGCTGCTGGA ACTCTCCTGG GTGGTGCAGG ATCTGCGGGG CCGTGGAGTC ACCTTCGGGC CGGGGTACGG CCCGCAGAGC GGGTCGCTGC TGCTGCACCT GCTGGGTCTC AACGGTATCG ATCCCATCGA TCACGGGTTG CCGTTCCTCG GCTTCGGGCG CGAGCTGGAG GCCCGGCGTC TGCACTTGCG CGTCGCCACC CGCGCCGAGC AGGCGGAACT GGGCTCGGCG TTGCGCCAGG GGGGTGCGGC CGCTGCGGCG CTGCCGGAAC AGGGGATCGA GGTCGTGGTG GGGCGCGACC CGACGCTCGC CTTGACCTGC GAGATGGTCC GCCTGGCCCG TGCACTCAAC GACAACCGCG ACTGCGATCC CCTGCGTTGG GCCTATCCGT GGGATGATCC GGATACCCTG CGCCTGATCG CCCGCGGGGA GACCGCCGGG ATCCCGCTGC TGGAGGATGC GCAGTTGCAG GAGCGCATGC GGGAGGCGGC GCCGCGCAGT CTCGAGGAAG TGACACAGGT CGTGGTGGCG GCCCGAGATG GGGCGCCGCA CGGTCTGCTC GAGCGGTATC GGGCGGCGCG CACGGGCGCG AGCCGTCCGC CATTGCCCCA TCCCGAGCTC GAGGACATCC TCGCCCCCAC GGGATACATC TGGCTCTACC GCGAGCAGGT GGTCGCGGCA CTGGCCCGGT TGCTCGGTTG TGAGCTGGCC GAGGCGGTCG GACTCGCACA ACGGCTAAGC GAGGAGGGGG GCGATGCCCA CGAGGGGGAG CTTTCCCGGC AGCTCGGCGA GCGCATCGCT GCCCGTTGCC AGCTTCCCTA CGCGCGGGGG CTTTATCTGC TTCGTGCCCT GCGCCAGGGC CTGGCCCAGG TGGTGGATCG GGCGGCCACG CTGGTCGAGG TCACCGAGGC TTACCGTCAG GCCTACTACA AGGCACGCTA CCCGGCGGTT TTCCAGGCTG CGCGGCTGAA CCGGGCGCTG CGGCGGGTGA CGCCTCGGGG CGGTGTGCGT TATGGGGTGG GAGGCGGGCC GGATGGCGTC TGTCCGCATC GGGAGATTCT CATTCGCCTC TGCAAGGAGG CGTTGAGTGA CGGTGTGACC GTGCTGCCAC CGGATATCAA TCGCAGCGAC TGGGGGTTTC GCCCCCTGGA TCGGAACACG GTGATCTACG GCCTCGGGGC GATTGCGCAG ATCGACCGGC AGACCGCCGA CCGACTGGTG CTGCGCCGCC GCGGGGGTGA GTACCGCAGC CTGATGGATC TCATCATCCG GGGGTTCGGA GGCACCGCGC CGGCGATACA GGTTGAGCCG CTGATCTTCT CCGGTGCGCT GGACGAGTTC GGCCGCGATC GCTGGCACTT GCGCAGGGAG CTCGATGAGG CGCAGGCCGT CCGAGGGTGG CAATACGCCG CGGATGGGCG GACAACCCAC TCTCTGGCGG GCGGTTTGGA TGCCTGGCAG GCCGTTCATC CCGGGGAGGG ATGGGCCTTC CAGCGGGAAC TTGATGTGCT CGCCTGTGTC CCGTCACGTC AGTACTTTCC GGAACCTGCC CCGGCCGAAC GGCGCTTGCG CCCGGTCCGG TGA
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Protein sequence | MHDDATTIVP FRGGALERAA WDRLWDAADG GCVRRALGER RTRYQRRVEQ EMAAFARLGL EPGVLLELSW VVQDLRGRGV TFGPGYGPQS GSLLLHLLGL NGIDPIDHGL PFLGFGRELE ARRLHLRVAT RAEQAELGSA LRQGGAAAAA LPEQGIEVVV GRDPTLALTC EMVRLARALN DNRDCDPLRW AYPWDDPDTL RLIARGETAG IPLLEDAQLQ ERMREAAPRS LEEVTQVVVA ARDGAPHGLL ERYRAARTGA SRPPLPHPEL EDILAPTGYI WLYREQVVAA LARLLGCELA EAVGLAQRLS EEGGDAHEGE LSRQLGERIA ARCQLPYARG LYLLRALRQG LAQVVDRAAT LVEVTEAYRQ AYYKARYPAV FQAARLNRAL RRVTPRGGVR YGVGGGPDGV CPHREILIRL CKEALSDGVT VLPPDINRSD WGFRPLDRNT VIYGLGAIAQ IDRQTADRLV LRRRGGEYRS LMDLIIRGFG GTAPAIQVEP LIFSGALDEF GRDRWHLRRE LDEAQAVRGW QYAADGRTTH SLAGGLDAWQ AVHPGEGWAF QRELDVLACV PSRQYFPEPA PAERRLRPVR
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