| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1565 |
|---|
| Symbol | |
|---|
| ID | 4710599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1704702 |
|---|
| End bp | 1705937 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639856029 |
|---|
| Product | Orn/DAP/Arg decarboxylase 2 |
|---|
| Protein accession | YP_001003131 |
|---|
| Protein GI | 121998344 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase
[TIGR03099] pyridoxal-dependent decarboxylase, exosortase system type 1 associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCGC ACGTCGCTCA CTTGCCCTGT ATGGAGGTCT TCTCCATACA GGACGGTGAA
TTAACGCTAC AAGGCGTCCC GGTCACACAG TTGGCCGAGA GCGCCGGACA GACGCCGTTC
TTTGCTTATG ATCGAGCCAT GATCGACCAC CGCGTGGCGG CATTGCGCGC TACGCTCCCG
CCCGAGATCC ATCTTCACTA CGCGATCAAG GCCAATCCTA TGCCGGAACT CGTCCAGCAC
CTCGCCCGAA TGGTCGACGG CTTGGACGTG GCGTCCGCTG GGGAGCTGGC GCTGGCACTT
GAAACCGAGA CCGCCCCGGC CGATATCTCC ATTGCGGGGC CGGGGAAACA GGATCACGAG
CTTGCTCGGG CATTGGAATC CGGCGTCACC ATCAACTTGG AGTCTCCCGG CGAGCTGGAG
CGCCTGGCCG AGCTGGCCAA CCGGCACGGG CGCACCCCCT CTGTGGCGAT CCGGATCAAT
CCCGATTTCA CGCTCAAGAC GTCTGGTATG CAGATGGGCG GCGGCCCCAA GCAGTTCGGG
ATTGATACCG AGCAGGCCCC GGCAGTTCTG CATCGAATCG GCGAACTCTC TTTCGATTTT
CGAGGTTTCC AGATCTTCGC AGGTTCCCAG AACCTGAACA CGGACGCCCT CATCACTGCT
CAGAACGGCA TCTTCGAACT CTTCAACCGC CTTGCCGACG AGGCTCCCGC TCCGGTCACT
CTGCTCAACA TGGGGGGAGG GCTTGGCATT CCCTACTTCG CCAACGATAG ACCCCTGGAC
TTAGACCGCT ACGGGGAACA CCTGCACCGC CATGTCGCGG CTTGTCGCCA GAGGTTCCCG
AATGTCCAGA TCGTGCTTGA GCTCGGCCGC TACCTGGTGG GTGAGGCCGG AGTTTATGTC
GTTCGCGTTA TCGATCGTAA GGTTTCGCGC GGGCAGGTCT TCCTGGTCAC CGATGGCGGC
ATGCACCACC ACCTTGCAGC CTCGGGGAAT CTTGGCCAAA CCATACGCCG CGACTACCCC
ATCGCCCTTG CCACGGCGAT GGACCACCCC GCCGCGGAGG ACGTGTCTGT TGTCGGTCCG
TTGTGCACGC CGCTAGATGT TCTGGGTAGT CGCGTCCCTC TCCCCTACGC GAAGCCCGGG
GATCTGATCG TGGTGTTCCA GTCCGGCGCT TACGGTCTGA GTGCGAGCCC AACCTATTTT
CTTAACCACC CTAAGGCAGC GGAATTACTT GTTTGA
|
|---|
| Protein sequence | MNPHVAHLPC MEVFSIQDGE LTLQGVPVTQ LAESAGQTPF FAYDRAMIDH RVAALRATLP
PEIHLHYAIK ANPMPELVQH LARMVDGLDV ASAGELALAL ETETAPADIS IAGPGKQDHE
LARALESGVT INLESPGELE RLAELANRHG RTPSVAIRIN PDFTLKTSGM QMGGGPKQFG
IDTEQAPAVL HRIGELSFDF RGFQIFAGSQ NLNTDALITA QNGIFELFNR LADEAPAPVT
LLNMGGGLGI PYFANDRPLD LDRYGEHLHR HVAACRQRFP NVQIVLELGR YLVGEAGVYV
VRVIDRKVSR GQVFLVTDGG MHHHLAASGN LGQTIRRDYP IALATAMDHP AAEDVSVVGP
LCTPLDVLGS RVPLPYAKPG DLIVVFQSGA YGLSASPTYF LNHPKAAELL V
|
|---|
| |