Gene Hhal_1446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_1446 
Symbol 
ID4709177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp1558196 
End bp1560292 
Gene Length2097 bp 
Protein Length698 aa 
Translation table11 
GC content66% 
IMG OID639855913 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001003015 
Protein GI121998228 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAGACG ACTTGGCCTC CCCCACCACC TCCACCCGGG CACTGTCGAG CAGTCTGACG 
CAGACCCTCT TCCTACAGAG CGAAGACGGT ATGCTGGTGC TGCGCGATGG CCATTTCGTC
GCCTGCAACC CGGCAGCCGC CCGCATGCTC GGCTGGGACG ATCCGCAGCA GTTGATCGGG
CTGCGCCCGG AGGCTATCTC CCCCCAAATA CAGCCGGACG GCGCGTCGGC AGCGGATCGG
GTCCAAAGCC TGCTTCGTGC CGCAGTGAGC GAGGGCGCAC AACGCTTCGA GTGGATCCAC
ACCTCCCCGG AGGGCGGGCG ACTGTGGTTC GAAATCGTGC TCACTCCCCT GCACCTGGAC
GACGAGACCC TGTGCTGCGC GACACTGCGT GACATCTCCC GGCGCAAGGA GATGGAGCGG
CGGCTGCAGC TCTCTGCCAA GGTCTTCACC GCTACGCGCG ACGGGATCCT GATCACCGAC
GCCGACAGCC GCATCCTCCA GGTTAACGAC GCCTTCACGC GGATCACCGG CTACGCCGAG
GAAGAACTGC TCGGACGGAC GCCCCGGGTG TTGCAGTCGG GCCACCACGA CGCAGACTTC
TACCGGGTCA TGTGGGAGTC CATCCACCAG CAAGGCAGCT GGTCCGGGGA GCTGTGGGAC
CGCACCAAGT ACGGGACGCT GCAGCCGAAA TGGGTCACCA TCAGCAAGGT CACCGGCGCC
TACGGCGAGG TCATCAACTT CATCGCGGTC TTCAGCGACC TGACCGAGCT CAAGCGCTCC
CAGGAGCGGT TGCAGTTCCA GGCCTACCAC GACGCGCTCA CCGGACTGGC CAACCGGCTC
CTGTTCAAGG ACCGCATGGC ACGCGCCCTG GAACGTTCCC GCCAGTCCGA AGAGCAGCTG
GCCGTGCTGT TCATCGATCT GGATCACTTC AAGGACGTCA ACGACAGCCT GGGCCATACC
GCCGGCGATC GCATCCTCCG TCAGGTCGCC CACCGACTCC AGGCACGCCT GGGTGCCGAC
GACACCCTAG CCCGTCTCGG TGGCGACGAG TTCAGCATCT GCCTGGCCGA GATCCGCGAC
CACCGTGATG CCCTGGCCTG CGCTGAAACG GTCCACCAGG AGCTGGAGCG GCCCTTCCAG
TACAGCCAAC GCTGGTTCCA ATGCCGATGC AGCATCGGAA TCAGCATGTA TCCCGACAAC
GGCGAAACCG TGGAAGAGCT GATCCGCAAC GCCGACTCGG CGCTGCACAA CGCGAAGGCG
GAGGGCCGCA ATACCACGTG CTTTTATGCC GAGGAGCTGA CCGAGCGGGC CCAGCGCCGG
CTGGACCTTG CCCAGGAGAT GCGCCAGGGG CTCCAGCGGG GCGAGCTGAT CCCCTATTTC
CAGCATCAGG TCGACCTGAC CACCGGCCGC GTCGTCGGCA TCGAGGCCTT GGTGCGCTGG
CACCACCCCG AACGGGGGCT GCTGACCCCC GGCGCCTTTA TCCCCGTGGC CGAGGAGGTC
GGAACCATGG CCGCCCTCGG CGAGGACATC CTGCTGCAGG CGTGTCAGCA AGGCCGCACC
TGGCTGGACC AGCGGCGCGA ATTCGGCCGG GTGGCTGTCA ACCTGTCCGC CGCCCAGTTC
CACAACGGCG ACATCGAGAA GACCGTCCGG CGCACCCTGG AGCAGACAGG CCTGCCGGCC
CAGTGCCTGG AACTGGAGAT CACCGAATCG ACCATCATGG ACCTCAGCCC CCGCACCCTG
GAGCGACTGG CCGCTCTGCG CCGGGCGGGG GTATCGTTGA GCATCGATGA CTTCGGGACC
GGCTACTCGT CCCTGCTCTA TCTCAAGCGC CTACCGATCA ACCGGGTCAA GATCGACCGC
GGCTTCATCT GGGACATGGG GACGACGCCG GAATCCCGCT CCATCGTCGA TACCATCCTG
CAGCTGGCCC ACGTGCTCGG CCTGGAGGTC GTGGCCGAAG GGGTGGAGAC CATCCAGCAA
CGCGATCAGC TGATCGACGC CGGGTGCCGG GTCGCCCAGG GTTTCCTGTG GGCGCGCCCG
GAGCCCCATC CCCACCTGCG CTGCTGCAGC GCGCAAGCGT CCAATGATCC GCCGTAG
 
Protein sequence
MKDDLASPTT STRALSSSLT QTLFLQSEDG MLVLRDGHFV ACNPAAARML GWDDPQQLIG 
LRPEAISPQI QPDGASAADR VQSLLRAAVS EGAQRFEWIH TSPEGGRLWF EIVLTPLHLD
DETLCCATLR DISRRKEMER RLQLSAKVFT ATRDGILITD ADSRILQVND AFTRITGYAE
EELLGRTPRV LQSGHHDADF YRVMWESIHQ QGSWSGELWD RTKYGTLQPK WVTISKVTGA
YGEVINFIAV FSDLTELKRS QERLQFQAYH DALTGLANRL LFKDRMARAL ERSRQSEEQL
AVLFIDLDHF KDVNDSLGHT AGDRILRQVA HRLQARLGAD DTLARLGGDE FSICLAEIRD
HRDALACAET VHQELERPFQ YSQRWFQCRC SIGISMYPDN GETVEELIRN ADSALHNAKA
EGRNTTCFYA EELTERAQRR LDLAQEMRQG LQRGELIPYF QHQVDLTTGR VVGIEALVRW
HHPERGLLTP GAFIPVAEEV GTMAALGEDI LLQACQQGRT WLDQRREFGR VAVNLSAAQF
HNGDIEKTVR RTLEQTGLPA QCLELEITES TIMDLSPRTL ERLAALRRAG VSLSIDDFGT
GYSSLLYLKR LPINRVKIDR GFIWDMGTTP ESRSIVDTIL QLAHVLGLEV VAEGVETIQQ
RDQLIDAGCR VAQGFLWARP EPHPHLRCCS AQASNDPP