| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1384 |
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| Symbol | |
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| ID | 4711332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1491265 |
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| End bp | 1492839 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639855851 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001002953 |
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| Protein GI | 121998166 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.095402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGTGCAC AGAAAGGCCC GCTGAAAGGG CTGAATATTC CGTTGACGGG CACGGCCACG
CTGATCGTGC TCGCTTTCCT CATCTTCGGT GCCTGGGATC CGGAATACGC CGAGACGGTC
TTCGAGGGCA TCAGCGGCTG GGTCATCGAG ACCTTCAAGT GGTACTACAT CGGGGTCGTC
GCGTTCTTCC TGCTCTTCGC GCTGTTCCTG ATGTTCAGCC GCTTCGGTGA CCTCAAGCTT
GGGGACGACG ACCGGCCACC GGAGTTCAGT TACTTCGCCT GGTTCTCCAT GCTCTTCGGT
GCCGGTATGG GCATCGGCCT GTTGTTCTGG AGCATCGCCG AGCCGGTCTG GCACTTCCAG
GGCAACCCCT TCATCGACGA GGGTGAGACG GCCGCCGCGG CTGACTCGGC CATGCGCCTG
ACCTACTTCC ACTGGGGTAT GCACCCGTGG GCCATCTACG CCATCGTGGC GCTTTCGCTG
GCCTTCTTCT GCTACCGCAA GAAGCTGCCG CTGGCCATCC GTTCGGCGCT CTATCCGCTC
ATCGGCAACC GCATCTACGG CCCGATCGGC CACGCGGCGG ACGTCCTGGC GGTCTTCGGC
ACCATCTTCG GCGTGGCCAC CTCCCTGGGG TTCGGTGCAA TCCAGATCAA CACCGGCCTC
AACGAACTCA CCGGGCTTGA GCTCAGTGTC ACCAACCAGC TGCTGATCGT CGCCGTGGTC
ACCCTGATTG CCGTGGGTTC GGTGATCTCC GGCGTGGGGC GGGGCGTGAA GGTCCTCTCG
CAGCTGAACC TGATCCTCAG CGCCGTGATC CTGCTCTTCT TCCTGAGCTT CGGGCCGACC
CTTTATCTGC TCTCGAGCTT CGTCCAGGGC ATCGGCGACT ACCTGCAGAA CGTGGTCTAC
CTCAGCTTCT GGACCGACGC CAGCGGGGCC CGTGAGGCCG GCGACTGGCA GCTCTCGTGG
ACGGCCTTCT ATTGGGGCTG GTGGATCGCC TGGGCCCCCT TCGTGGGTAT GTTCATCGCC
CGCATCTCCC GCGGTCGCAC CATCCGCGAG TTTCTGGGCG GCGTGCTGCT GGTGCCGACC
CTGCTCGCCC TGGGCTGGCT GACCGTCTTC GGTGGCACCG GCCTGTACCA GGAGCTCTTC
GGTGCCGGGG GGCTGGTCGA GGCGGTGTCC GAGGATGAGA CCATCGCCCT TTACTACACC
ATCGAAGCGG TGGCCCCCGG GGTGATTGCC ACCATCTTTG CGGCGATCGC CACGGTCCTC
ATCGCCACCT ACTTCATCAC CTCGTCGGAC TCGGCGACGC TGGTGGTGAC CATGCTGCTG
TCTGTCGGCA ACACCGAGCC GCCGACCTAC CAGCGGGCCT TCTGGGGCGT GGCCGAAGGC
TGCGTGGCCG CGGTACTGCT GGTGGCTGGT GGCTTGGTTG CCCTGCAGGC GGCGGCCATC
GTCGCGGCGT TGCCGTTCTC GCTGCTGATG CTGCTGATGT GCTACGCCCT GATCCGCGGG
CTGCAGGAGG AGAAGCGGCG TATGCAGCTC TCCTGGCAGC CGGGGCAGGG GCCGCCGGCG
GCACCGCATC TGTGA
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| Protein sequence | MRAQKGPLKG LNIPLTGTAT LIVLAFLIFG AWDPEYAETV FEGISGWVIE TFKWYYIGVV
AFFLLFALFL MFSRFGDLKL GDDDRPPEFS YFAWFSMLFG AGMGIGLLFW SIAEPVWHFQ
GNPFIDEGET AAAADSAMRL TYFHWGMHPW AIYAIVALSL AFFCYRKKLP LAIRSALYPL
IGNRIYGPIG HAADVLAVFG TIFGVATSLG FGAIQINTGL NELTGLELSV TNQLLIVAVV
TLIAVGSVIS GVGRGVKVLS QLNLILSAVI LLFFLSFGPT LYLLSSFVQG IGDYLQNVVY
LSFWTDASGA REAGDWQLSW TAFYWGWWIA WAPFVGMFIA RISRGRTIRE FLGGVLLVPT
LLALGWLTVF GGTGLYQELF GAGGLVEAVS EDETIALYYT IEAVAPGVIA TIFAAIATVL
IATYFITSSD SATLVVTMLL SVGNTEPPTY QRAFWGVAEG CVAAVLLVAG GLVALQAAAI
VAALPFSLLM LLMCYALIRG LQEEKRRMQL SWQPGQGPPA APHL
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