| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1270 |
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| Symbol | |
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| ID | 4710739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1378288 |
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| End bp | 1382010 |
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| Gene Length | 3723 bp |
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| Protein Length | 1240 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639855743 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001002847 |
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| Protein GI | 121998060 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCACGG CTGAGGACGC CAAGCCCCTC GAACCGCTGC GCTTCCCGCT GTACGGATCG
CGGCTGATCG AGGCCAGCGC CGGGACGGGC AAGACCTACA CCATCGCCGC GCTCTACCTG
CGTCTGGTCC TCAACCACGG CCGTGAGGCC GCGTACGGGC AATCGCTGAC CCCGCCGCAG
ATCCTCGTGG TGACCTTCAC CGAGGCGGCC ACCCGCGAGC TGCGTGAGCG CATACGCAGC
CGCCTGGCAG AGGCGGCCGC GGCGTTTCGG GATCCGGATC AGGCCGTGGA GTTGGATCCG
TTCCTGGATG GGCTGCTGCG GGAGTATCCG CAGCGCGCAG AACGGGCCCA GGCAGCCCGG
GTGCTGGAGC TGGCCGCCGA GTGGATGGAC GAGGCGGCCG TGGCCACCAT CCACGCCTGG
TGCTATCGGA TGCTGCGCGA GCACGCCTTC GACAGCGGCA GTCTGTTCAC CCAGGATCTG
GAGACTGACC CCGGCGAGCT GCTCGCCGAA TCGGTCCGCG ACTACTGGCG GACTTTCGTC
TATCCCCTCG ACCCGGAGGC CTTCCAGCTC TTCCGGCAAG CGGTGGGGGC TGCGGATCCG
GATGCCCTGC AAAGGGCGCT GGCGCGTCTG ATCGGCGCCG ATGAGGAGCT CGCCGACGAT
GCGGATGACC CCCTGCTCGA GCCATCCGGC CTGGCCGAGC GCCTGGGCGC CTGGCACCAG
GCACTGGAAC AGCTCAAGGC GCCTTGGCGC GACGAGCGGG AGGCGGTGGA GGCCGAGTTT
CTCGATCTGC ACCGTCGCGT ACTCAACGGC ACGAAGTACA AGAACCCGCA GCAGTTGCTC
GAGCGCATGG CGGCCTGGGC AGACGATCCG GCCCAGCCGG TGCCTCTGAC TGACAAGGGT
AAGCCCGACC CGGGCCTGCT CGAGCGCATG AGCGCCACCG GTCTGGCGGA CCCATCGCGA
CATAAGAAGG GCCAGAGCCT GCCGGCCTCA CTCCATCGCG CCTTCAAGGC GCTGGATCGT
CACGTGGAGC TGGATGCGCC CGGGGTGGCC ATCCTGCGGG CCGCCGCTCG CTGGATCACC
AGGCGTTTTC AGGCGGAGCA GCGCCGCCGG GCGCAGCTCG GTTTCCAGGA TCTGCTCACC
CGGCTGCGTG ATGCCCTGCG GGGCCCCGGG GGGGCGCGTC TGGCGCAGAC CATCCGCAGC
CAGTTCCCGG TGGCGCTGAT TGACGAGTTC CAGGACACCG ATCCGGTTCA GTACGAGCTC
TTCGAGACGG TCTACCGGAT CGCGGACAAT GATCCGGGGC TGGGGCTTTT CCTGATCGGG
GATCCCAAGC AGGCGATCTA CGGGTTTCGC GGGGCGGATA TCCACAGTTA TCTGCGCGCC
CGGGCGGCCA CCGAGGGGCG ACACTACACG CTGCCGCGCA ACTTTCGCTC CAGCGAGGCG
CTGGTTGGCG CGGTCAACCA GCTCTTCGCG CGGGCCGAGG GGAGCTGGCC GGCGGGCGCC
TTCGCCTTCC GGGGCGGCTC TGGGGGCGGG TTGCCCTTCC ACCCGGTGGA GGCCCAGGGG
CGTGGCGAGT TCTTCGAGGA GGCGGGGGCG GAGCATCCGG CGCTGAACCT TTGGTGCCAT
GACCCTGGCG TGTCGGTGGC GAAAAACGCC TACCTCCCCA CCTACGCCGA GGCGTGTGCA
GCGCGTATTG TGGCGTTGCT CAACGGCGGT GCGGCGAGAC CGGCGGTCAC CGGGTTTCGC
CACCCGGGCG GTCATCTGGA GCCGGTGCGC CCGCGGGATA TGGCCGTGCT GGTGCGCAAC
CACACCGAGG CGAGCGCCAT CCAGGAGGCG TTGGCCGCCC GCGAGGTGCG CAGCGTCTAC
CTCTCCGATC GGGATTCGGT GCTGGCCACC GCTGAGGCCG ACGACCTGGT GCGCTGGCTG
CGCGCCTGTG CCGAGCCGAC GGATGAGGGG CTGGTGCGGG CGGCCCTGGC CACCCCCACC
CTGGGACTGG CGCTGAGCGA GCTCGACCGG CTGGTGACCG ATGAGCTGGC CTGGGAGCGG
CGCATCGAGC AGTTTGGCGA GTATCGTCGG TTGTGGCGCA GCCGCGGGGT GCTGGCGATG
CTCCACCGCC TGCTGCACGA CTTCGGCGTG CCGCAGCGGC TGTTGGCCAT CAGCGGCGGC
GAGCGGTCGC TGACCAATCT GCTCCACCTT GCCGAGCTGT TGCAGCAGTG GGCGCGCGAG
CACGACGGTG AGCAGGCGCT GATCCGCCAC CTGGTGGAAC TGCGCCAGCA GGCCCGCAAC
GGGGTGGAGG ATCAGATCCT GCGCCTGGAG AGCGATGAGG ATCTGGTCAA GGTGGTAACC
ATCCACAAGT CCAAGGGGCT GCAGTATCCG TTGGTCTTCC TGCCCTTCGT CTGCACCTTC
CGCCCGGTCA CCGCGCGGGA CGCCCCCCGA CGGGTGCCGG ATCAGCACGG GCGGTTGCGC
TGGCGTTTCG AGCTGGATCA GGAGGACGTC GAGGCGGCCG ACTCCGAGCG CCTGGCCGAG
GACCTGCGCC TGTTCTACGT CGCCTTGACG CGGGCGCAGC ACGCCTGCTG GGTCGGTATG
GCGCCGATCA CCCAGGGCAA TACCAAGCGC AGCCTGCTCG AGCGCAGCGC AGCGGGCTAT
TTGCTCGCTG GACCGGATGG GGTGGAGCCC GGTGGGCTCG GGGCGGTGCT TGAGCAGGCC
GCGGCTGCAG ATCCGGCCAT CACCGTCAGC GAGCCGCTGC TCGATGAGGC CAGTCGCTTC
GTCGGTGATC CGGCGGCGCC GCCGCTCGGT GAGCCGTGCC AGCCCCGGCG ACGGGCCGCC
GATGCCTGGT GGATTGCCAG CTACAGTGCT TTGGTTCGCC ACGATACCGC CGGTCGTGCT
CGCTCGGCGC CGGCGAGCGC CGCCGAGGAT GTCCTGCGCG AGGAGTCGGG GCACGCCCTT
GTCCAAGAAG CGGGGGGGGA TGCTGGCTCG TGGCACGGCT TTCCGCGCGG TCCGGATGCC
GGCACCTTTC TGCACAACCT CCTGGAGTGG GCCGCGACGC AGTTGGGGCT GGCCACTGCC
GGCGCGCAGC CCGAGTGGCT GGATGCCGAG GTCGAGCGGC GCTGCCGCTT TCGCGGTTGG
GACGGGCAGG TGGCGACCGT GCAGGGCTGG CTGCGCGCGC TGCTCGGCGC CGAGCTGTCG
TTGCCCGGTG CGCAGACGAC CCTCGCGCTG GGACGGCTAC CGACCTATCA GGCGGAGCTG
GAGTTCCTGA TCGAGACCCA GCCGCTGCGC GCGGATCGGC TTGACGACCT GGTGTGCCAG
CACCTGTTGC CGGGGCGTGC CCGCCCGCCG GTCGCCCCGG CGCGGCTCAA CGGCATGCTC
AAGGGGTTCA TCGACCTGGT CTGCTGCCAT GAGGGCCGCT ACTACGTCGC CGACTATAAG
TCCAACTGGC TCGGAGGTGG CGATGGCCAT TATGCCCCGG AGTACCTGGA GGCCGAGGTG
CTGGAGCGCC GCTACGACCT GCAGCTGGTG ATCTACACCC TGGCGCTGCA CCGGCTCCTG
CGCGCACGGA TGCCGGATTA CGACTACGAT CGCCACGTCG GTGGTGGCTT CTATCTCTTC
CTGCGCGGCG TCCAGGCGCC GGGGCAGGGC GTGTTCCACG CGCGTCCGCC GCGGGCCCTG
ATCGAAGAGC TCGATGGGTG GCTGCGCGAC GGGCCCGATG GGCCGCAGGA GCAGACGCTG
TGA
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| Protein sequence | MGTAEDAKPL EPLRFPLYGS RLIEASAGTG KTYTIAALYL RLVLNHGREA AYGQSLTPPQ
ILVVTFTEAA TRELRERIRS RLAEAAAAFR DPDQAVELDP FLDGLLREYP QRAERAQAAR
VLELAAEWMD EAAVATIHAW CYRMLREHAF DSGSLFTQDL ETDPGELLAE SVRDYWRTFV
YPLDPEAFQL FRQAVGAADP DALQRALARL IGADEELADD ADDPLLEPSG LAERLGAWHQ
ALEQLKAPWR DEREAVEAEF LDLHRRVLNG TKYKNPQQLL ERMAAWADDP AQPVPLTDKG
KPDPGLLERM SATGLADPSR HKKGQSLPAS LHRAFKALDR HVELDAPGVA ILRAAARWIT
RRFQAEQRRR AQLGFQDLLT RLRDALRGPG GARLAQTIRS QFPVALIDEF QDTDPVQYEL
FETVYRIADN DPGLGLFLIG DPKQAIYGFR GADIHSYLRA RAATEGRHYT LPRNFRSSEA
LVGAVNQLFA RAEGSWPAGA FAFRGGSGGG LPFHPVEAQG RGEFFEEAGA EHPALNLWCH
DPGVSVAKNA YLPTYAEACA ARIVALLNGG AARPAVTGFR HPGGHLEPVR PRDMAVLVRN
HTEASAIQEA LAAREVRSVY LSDRDSVLAT AEADDLVRWL RACAEPTDEG LVRAALATPT
LGLALSELDR LVTDELAWER RIEQFGEYRR LWRSRGVLAM LHRLLHDFGV PQRLLAISGG
ERSLTNLLHL AELLQQWARE HDGEQALIRH LVELRQQARN GVEDQILRLE SDEDLVKVVT
IHKSKGLQYP LVFLPFVCTF RPVTARDAPR RVPDQHGRLR WRFELDQEDV EAADSERLAE
DLRLFYVALT RAQHACWVGM APITQGNTKR SLLERSAAGY LLAGPDGVEP GGLGAVLEQA
AAADPAITVS EPLLDEASRF VGDPAAPPLG EPCQPRRRAA DAWWIASYSA LVRHDTAGRA
RSAPASAAED VLREESGHAL VQEAGGDAGS WHGFPRGPDA GTFLHNLLEW AATQLGLATA
GAQPEWLDAE VERRCRFRGW DGQVATVQGW LRALLGAELS LPGAQTTLAL GRLPTYQAEL
EFLIETQPLR ADRLDDLVCQ HLLPGRARPP VAPARLNGML KGFIDLVCCH EGRYYVADYK
SNWLGGGDGH YAPEYLEAEV LERRYDLQLV IYTLALHRLL RARMPDYDYD RHVGGGFYLF
LRGVQAPGQG VFHARPPRAL IEELDGWLRD GPDGPQEQTL
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