| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1143 |
|---|
| Symbol | |
|---|
| ID | 4709391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 1242815 |
|---|
| End bp | 1244053 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639855617 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001002721 |
|---|
| Protein GI | 121997934 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCGCG GAACCAACAA GCTGACGGAT CGCCAGTGCC GAACGGCGAA GCCTCCCGAG
GGCAAGCAGC AGCTGAAGCT CACTGATGGC GGCGGACTGG TCCTCCTGGT CAAGAGCAAC
GGCGGCAAGC AGTGGCAGTT CCGCTACCGG CGACCCTCAG GGCGCGAGGC GACGATGGGA
CTGGGGGTCT ACCCCGACGT TCCGCTGTCC AAGGCGCGGG AGCGCCGTGA TGAGGCGCGC
GCGCTACTTG CCGACGGTAT CGACCCGATT GACCAACGCA AGGCGCAGCG TTCGGCAGCC
GCCTCCGCCG ACACCCATTC GTTCGAGGCC GTCGCACGTG AGTGGTGGGA CGCTGTCCAC
CGGCACAAGG TGGTTGCGTC CCACGCGAAC CGGAATCTTC GTCGCCTGGA GCAATACGCC
TTCCCGAAGC TTGGCCGCCG GCCAGTGAGC GCGATTGAAC CACCCGACGT CCTGGAAGCA
CTTCGGCGTA TCGAGGCGCT GGAGCACGTT GAGACCGCGC ACCGCGTGAA GACCCTCATT
GGGCAGGTAT GCCGATATGC CATCGCTACC GGACGAGGCA GCCGCGACCC CACTGCAGAT
CTGCGGGGGA TGCTGCGCTC GCCAAAGACG CGCCACCTCC CCGCGATCAC GGAGCCAGCG
GAACTTGGGC CGTTGCTGCG GGCTATCGAC GGGTATCGCG GGCAGCCCAC GACCCGCGCC
GCGTTGCAGC TTGCGCCCAT CGTGTTTTGC CGGCCCGGCG AGCTAAGAGC CGCGGAGTGG
CAGGCGTTCG ATCTGAGTAG CGGCACCTGG GACTACCAGC CAAGCAAAGA CGGTGACCCC
CTGGTGACAC CGCTGCCAAG GCAGGCCATT TCCATACTCC GCGAGCTGGA GCCGATCAGT
CGCAGCAGCC GTTATCTGTT CCCCTCAGGA CGGACCCCGG ATCGGCCGAT TAGCGACAAC
ACCCTCACGG CCGCGCTCAA GCGCCTGGAT TATGGCGGGC GCATGGTGGC GCACGGCTTC
CGCGCAGCCG CCCGCACCAT CCTGGTCGAA CGGCTTGGCT GGGGGATCGA AATCGTCGAG
ATGCAGCTGG GCCACCGGGT TCGCGACGCC CACGGCCGCG CCTACAACCG CACTCAATGG
ATCGAGCAAC GTGGCGTCAT GCTGCAGCAG TGGGCCGATT ACCTGGACGA GCTTCGGGAG
GCAAGCGACA CAGAGCCAAC GGCTGACCGG GACCGTTAG
|
|---|
| Protein sequence | MGRGTNKLTD RQCRTAKPPE GKQQLKLTDG GGLVLLVKSN GGKQWQFRYR RPSGREATMG
LGVYPDVPLS KARERRDEAR ALLADGIDPI DQRKAQRSAA ASADTHSFEA VAREWWDAVH
RHKVVASHAN RNLRRLEQYA FPKLGRRPVS AIEPPDVLEA LRRIEALEHV ETAHRVKTLI
GQVCRYAIAT GRGSRDPTAD LRGMLRSPKT RHLPAITEPA ELGPLLRAID GYRGQPTTRA
ALQLAPIVFC RPGELRAAEW QAFDLSSGTW DYQPSKDGDP LVTPLPRQAI SILRELEPIS
RSSRYLFPSG RTPDRPISDN TLTAALKRLD YGGRMVAHGF RAAARTILVE RLGWGIEIVE
MQLGHRVRDA HGRAYNRTQW IEQRGVMLQQ WADYLDELRE ASDTEPTADR DR
|
|---|
| |