| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1101 |
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| Symbol | |
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| ID | 4709935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 1192926 |
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| End bp | 1194734 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639855572 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001002679 |
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| Protein GI | 121997892 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.248126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAGG ATCAACAGTC GCAAATCAAG CAGCTCATCG CCAAGGGCAA AGAGCAGGGC
TTCCTAACCT ACGCAGAGGT TAACGACCAC CTCCCGGACG ATATCGTCGA CCCGGATCAA
ATCGACGATA TCATCGGGAT GATCAACGAC ATGGGGATCA ACGTCCACGA GACGGCCCCG
GACTCGGACG AACTGCTGCT CGCCGAAACC ACTGTCGCCA CAGACGAGGA CGAGGCCGAG
GAGGCCGCCG CTGCCCTCGC CGCAGTGGAC GCGGAGTTCG GCCGCACCAC GGACCCGGTG
CGCATGTACA TGCGCGAGAT GGGCAGTGTC GAGCTGCTCA CGCGCGAGGG CGAGATCCAG
CTGGCCAAGC GCATCGAGGA CGGGCTCGAC CGCGCCCTGG CCGCGCTGTC CTCTTACCCG
GAGGCAGCCC GCCAGCTGAT CATGCTCTAC GATCGCGCCC AGGAGGGCGA GGCCCGGCTA
ACCGATATCG TCGCCGGATT CCGGGATCGC GAAGACGACT CCGAGCAACC GCCGGAGGCC
CCTGCCGCCC CGGAGGCCGC TGCGGACGAG GACGAGGAGG CGACCAGCGC CGAGACCGGC
CCCGACCCGG AGGCCGTGGC CGAGCTCTTC GAGCGTCTGC GCGCCGCCTA CAACGAGATG
CAGGAGGTCC TGGCCACTGA GGGCTCGGCG TCCCCTCGCA TTGCCGAGCT GCGCGGCGAA
CTGGAAGAGG TCTTCCTCAG CATCAAGTTC ACCCCCAAGG TGGTCGACGC GGTGGCCGAC
CGGCTGCGCG GCACGGTGGA TACGATCCGC GCCCGTGAGC GCGAGATCAT GAACCTGTGC
ACCCGCGAGG GGCGCATGGC GCGCAAGGAG TTCGTCAAGA GCTTCCAGGA CCGCGAGACC
GACCCCACCT GGCTGGACGA CCTGCTGGCC GAAGGCGAGG AGCGTGCCGA GCGGCTGCAG
CCCCACGCCG AGGCGATCCG CAAGGCGCAG TCAGAACTCA AGGAGATCGC CGACAAGAAC
GGCCTCTCGG TGGCGGAGAT CAAGGAGATC AACCGCCGCA TGTCCATCGG CGAGGCCAAG
GCCCGCCGCG CCAAGAAGGA GATGGTCGAG GCCAACCTGC GCCTGGTGAT CTCCATCGCC
AAGAAGTACA CCAACCGCGG GCTGCAGTTC CTCGACCTGA TCCAGGAAGG CAACATCGGC
CTGATGAAGG CGGTGGACAA GTTCGAGTAC CGGCGCGGCT ACAAGTTCTC GACCTACGCC
ACCTGGTGGA TCCGGCAGGC GATCACCCGC TCCATCGCCG ACCAGGCGCG GACCATCCGC
ATCCCGGTGC ACATGATCGA AACGATCAAC AAGCTGAACC GGGTGTCGCG GCAGATGCTC
CAGGAGATGG GCCGCGAGGC CACCCCCGAA GAGCTGGCCG AGCGCATGGA GATGCCCGAG
GACAAGGTGC GCAAGGTCCT CAAGATCGCC AAGGAGCCGA TCTCCATGGA GACGCCGATC
GGCGACGACG AGGACAGCCA CTTGGGCGAC TTCATCGAGG ACACCAGCGT CACCTCGCCG
GTGGACTCGG CCACCTCGGA GGGACTGCGC GAGTCGGTCC GCGAGGTGCT CTCGGGGCTG
ACCCCGCGCG AGGCCAAGGT CCTGCGCATG CGCTTCGGCA TCGACATGAA CACCGACCAC
ACCCTGGAGG AGGTCGGCAA GCAGTTCGAC GTCACCCGTG AGCGGATCCG GCAGATCGAG
GCCAAGGCGC TGCGCAAGCT GCGCCACCCC ACCCGCTCCG ACGGGCTGCG CAGCTTCCTC
GAAGAGTAA
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| Protein sequence | MSQDQQSQIK QLIAKGKEQG FLTYAEVNDH LPDDIVDPDQ IDDIIGMIND MGINVHETAP
DSDELLLAET TVATDEDEAE EAAAALAAVD AEFGRTTDPV RMYMREMGSV ELLTREGEIQ
LAKRIEDGLD RALAALSSYP EAARQLIMLY DRAQEGEARL TDIVAGFRDR EDDSEQPPEA
PAAPEAAADE DEEATSAETG PDPEAVAELF ERLRAAYNEM QEVLATEGSA SPRIAELRGE
LEEVFLSIKF TPKVVDAVAD RLRGTVDTIR AREREIMNLC TREGRMARKE FVKSFQDRET
DPTWLDDLLA EGEERAERLQ PHAEAIRKAQ SELKEIADKN GLSVAEIKEI NRRMSIGEAK
ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA
TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRVSRQML QEMGREATPE ELAERMEMPE
DKVRKVLKIA KEPISMETPI GDDEDSHLGD FIEDTSVTSP VDSATSEGLR ESVREVLSGL
TPREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP TRSDGLRSFL
EE
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