Gene Hhal_0994 details

Gene Information

• Locus tag: Hhal_0994
• Symbol: prfA
• ID: 4709566
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 1066480
• End bp: 1067571
• Gene Length: 1092 bp
• Protein Length: 363 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639855465
• Product: peptide chain release factor 1
• Protein accession: YP_001002572
• Protein GI: 121997785
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGGCGA CGATTCGCAA CAAGCTGGAG CGGATGGCGG AGCGGCACGA GGAGATCGGC 
GCGCAGCTGG CGGATCCTGA TGTCGTCGGC GACCCGTCGA AATTTGCCGA ACTTTCCCGC 
GAATACGCCC GGCTGGAGCC CGTCGTCCAG GACCTGAACG CCTACCGCGC GGAGGCCGAC 
ACGGTCGCCA GCGCGGAGGC GATGCTCAAC GACGGCGACG CTGAGATTCG CGCCCTGGCC 
GAACAGGAGC TCGCCGAGGC GCAGCGCCGT CTTGAGGAGC TGGAGGGTGC ACTGCAGCGC 
CATCTGGTGC CCACCGACCC CAACGATCAG CGCAACATCT TCCTGGAGGT CCGCGCCGGG 
GCCGGGGGTG ACGAGGCCGC CCTGTTCGCC GGGGATCTGC TGCGCATGTA CATGCGCTAC 
GCCGAGCGTC AGGGCTGGAA GACCGAGATC CTCTCAGCCC GGGAAGGCGA GCACGGCGGT 
TACCGCGAGG TCATCGCCCG GGTCAGCGGC CGCAGCGTGT ACGCCCGCCT GAAGTTCGAA 
TCCGGCGCCC ATCGCGTGCA GCGGGTACCG GCCACCGAAT CCCAGGGGCG GATTCACACC 
TCGGCGTGCA CGGTGGCCAT CCTCCCCGAG CTGGACGAGG TCAGCGCCAT CGAGGTCAAC 
ACCGCCGACC TGCGCGTGGA CACCTTCCGC TCCTCGGGCG CCGGCGGGCA GCACGTCAAC 
ACCACCGACT CGGCCATCCG CATCACCCAC CTGCCCAGCG GGCTGGTGGT GGAGTGCCAG 
GATGAACGCT CCCAGAACAA GAACCGCGCC AAAGCCATAG CGCTGCTCCA GGCGCGCCTC 
ACCGAGCAGG AACGGGCCAA GCAGCAGTCG GAGCGCAGCG AGCAGCGGCG TCTGGCGGTG 
GGCTCAGGGG ATCGCTCAGA GCGGATCCGG ACCTACAACT TCCCCCAGGG CCGGGTGACC 
GATCACCGCA TTGGGCTGAC GCTCTACAAG CTCGAGCAGG TGATGGAAGG CGGGATGGAT 
GAGCTCCTTG ACGGCCTCAC CCAGGAACAC CAGGCCGAAG CCCTCGCCGA GATCGCCGAG 
GACTCCGGCT GA 

 

Protein sequence

MKATIRNKLE RMAERHEEIG AQLADPDVVG DPSKFAELSR EYARLEPVVQ DLNAYRAEAD 
TVASAEAMLN DGDAEIRALA EQELAEAQRR LEELEGALQR HLVPTDPNDQ RNIFLEVRAG 
AGGDEAALFA GDLLRMYMRY AERQGWKTEI LSAREGEHGG YREVIARVSG RSVYARLKFE 
SGAHRVQRVP ATESQGRIHT SACTVAILPE LDEVSAIEVN TADLRVDTFR SSGAGGQHVN 
TTDSAIRITH LPSGLVVECQ DERSQNKNRA KAIALLQARL TEQERAKQQS ERSEQRRLAV 
GSGDRSERIR TYNFPQGRVT DHRIGLTLYK LEQVMEGGMD ELLDGLTQEH QAEALAEIAE 
DSG