| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0992 |
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| Symbol | |
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| ID | 4709564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 1063715 |
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| End bp | 1065109 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 639855463 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001002570 |
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| Protein GI | 121997783 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.37346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGATC CGACCAAATT CCCCAGGGGC CGCCGCTCCC CGGCCTTTTG TTGCCTGCGG
CCTAGTGTCG CGCTGGCCCT CGGTAGCATC CTGGTCGTCG GGTGTGCCGG CCCCCAGCCC
GATCCCGAGC CCCGCGCCGA CGTGCCGAGC GCGACGTCTG CCCCCGAGGT CGAGCCGTGG
GAGCCCTCGC CGCGGGATCG GGCGATCCGC CACGTGCTGG CCGCCGAGAT CGCGGTGCGT
CGGGATCAAC TCGATCAGGC CTTGGTCCAT TACGCCAAGG CCATGAGCCT CAGCCGCGAC
GAGCGGGTAG CGGAGCGCGC CGTCCAGCTC AGCTTCATCC TCGAGGACGA GGGCGTCGCC
CAGGAGGCTG CCGAGCGCTG GCAGGAGCTG GCCCCGGAGC GGGTCGAGGC GCACCAGCTG
CTCGGCCTGC TGGCCCTGCG CCGGGGCGAT GAGCAGGCGG CCCGGGCGGA GCTGGAGAAG
GCCATCGAGC GCTGGCCGGG GACCGCCGGG CAGGCCTTCC TGCAGCTCGG CAGGCTGCTT
GGGCACGGTG CCGACGCCGG GGCGGCGGCG CGGGTGGTCG CCGAACTGGC CGAGGTGCAC
GCCGATGTCC CCGAGGCGCA CCGGGTCCTG GCCGCTGCGG CGGAGCGGGC CGGCGAAGAC
GAGCGGGCTG TGGCAGCGGC CGCCCGGGCC TTTGAGCTCG CCCCGGCGGA CCGCGAGGCC
GGGGCGACCC TGCTGCGCAC CGTCTTCCGG GCCGCCCGGG CTGGCACCCT CGAGCGTGAC
GAGGCCCTGG CGCACCTCGA GCGTGTGCGC GACGGGCAGC CGGTGCTGGT GCCCCGGGTG
GCCTTGCTGG AGGGGCAGCT GCTGCGCGAG GCGGGGCGGC CCGAGGCCGC GCTGGCCGCC
TACGAGCGGG GGCTGGAGGC CTCTTCCGAA GACCACGACC TGCTCTACGG GCGGGGGTTG
GCGCGGGCCG AGACCGGGGA TGTGGACGGT GCCGTGGAGG ACCTGCGGCG GGTTCTGGAG
GCCGACCCCG GGGATCCCCA CGCCCAGAAT GCCCTCGGCT ATACCCTGGT CGACCACAAG
CGTGATCTGT CCGAGGCCCG GGAGCTGATC GAGAGCGCCC TGGAGCAGGA GCCGGACAAC
GCCGCCTTTC TCGACAGCAA GGGGTGGCTG CTCTACCGGG AAGGGGATCC GGAGGCGGCG
TTGGAGTACC TGCGCCGCGC CTTCGATCAG GACCCCCATG GGGAGATCGG TGCCCACCTG
GGGGAGGTGC TCTGGGAACT CGGCGAGCGC AACGAGGCAC GCGAGGTCTG GTGTCGGGCG
CTGGATGCCG ACGGTGGCCA GCGCGCCCTG AAGCGGACGC TGGAACGCTA CGAGGTGGAT
GTCGATGACC GGTAG
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| Protein sequence | MPDPTKFPRG RRSPAFCCLR PSVALALGSI LVVGCAGPQP DPEPRADVPS ATSAPEVEPW
EPSPRDRAIR HVLAAEIAVR RDQLDQALVH YAKAMSLSRD ERVAERAVQL SFILEDEGVA
QEAAERWQEL APERVEAHQL LGLLALRRGD EQAARAELEK AIERWPGTAG QAFLQLGRLL
GHGADAGAAA RVVAELAEVH ADVPEAHRVL AAAAERAGED ERAVAAAARA FELAPADREA
GATLLRTVFR AARAGTLERD EALAHLERVR DGQPVLVPRV ALLEGQLLRE AGRPEAALAA
YERGLEASSE DHDLLYGRGL ARAETGDVDG AVEDLRRVLE ADPGDPHAQN ALGYTLVDHK
RDLSEARELI ESALEQEPDN AAFLDSKGWL LYREGDPEAA LEYLRRAFDQ DPHGEIGAHL
GEVLWELGER NEAREVWCRA LDADGGQRAL KRTLERYEVD VDDR
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