Gene Hhal_0858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0858 
Symbol 
ID4709858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand- 
Start bp926691 
End bp927341 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content69% 
IMG OID639855317 
Productribosomal protein L3 
Protein accessionYP_001002436 
Protein GI121997649 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.451508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAATTG GAATCGTCGG TCGCAAGCGC GGCATGACGC GTGTTTTTAC CGAAGAAGGG 
GGCTCGATCC CGGTGACCGT CGTCGAGGCG GACCCGAATC GCGTCACCCA GGTGAAGACC 
GAGGAGAGTG ACGGCTACCG CGCCGTGCAG GTGACCGCCG GCCGGCGCAA GCCGCAGCGC 
GTGCGCAAGC CTGAGGCCGG GCACTTCGCC CGGGCCGGGG TCGAGGCCGG CCGCGGCGTG 
TGGGAGTTCC GTCTGGACAA GGGCCAGCGG GCCAGTGACG AGGAGATGCC GGAGACCGGC 
GGCTCCATCG ACGTGGGCGG CTTCGAGGCC GGCCAGAAGG TCGACGTCAC CGGCACCACC 
AAGGGCCGGG GCTTTGCCGG TACGGTGCGC CGGCACAACT TCCGGGCGCA GCGCAACACC 
CACGGCAACT CGAAGTCCCA CCGGGTCCCG GGCTCCATCG GTCAGTGCCA GAGCCCCGGG 
CGCGTTTTCA AGGGCAAGAA GATGGCCGGG CAGATGGGCA ATCGACGCGC CACCATCCAG 
AACCTGGAGG TCGTGCGTGT GGATAGCGAG CGCAACCTGC TGCTCATCCG GGGCGCAGTC 
CCTGGGGCCG TCGGCAGCGA CCTGATCGTC CGTCCGGCGA GCAAGGCGTA A
 
Protein sequence
MAIGIVGRKR GMTRVFTEEG GSIPVTVVEA DPNRVTQVKT EESDGYRAVQ VTAGRRKPQR 
VRKPEAGHFA RAGVEAGRGV WEFRLDKGQR ASDEEMPETG GSIDVGGFEA GQKVDVTGTT 
KGRGFAGTVR RHNFRAQRNT HGNSKSHRVP GSIGQCQSPG RVFKGKKMAG QMGNRRATIQ 
NLEVVRVDSE RNLLLIRGAV PGAVGSDLIV RPASKA