| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0659 |
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| Symbol | |
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| ID | 4710254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 739742 |
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| End bp | 742270 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639855120 |
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| Product | ribonuclease R |
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| Protein accession | YP_001002243 |
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| Protein GI | 121997456 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAAGC AAACCAAGAA AAGTCCCCCG AAACGCGATC CTTATCAGGA GCGCGAACAA
GCGAAGTACG ACAACCCCAT CCCCAGCCGG GAGTATCTGC TGGAACTCCT CGCTGCCCAT
CGGCGCCCGC TGGGCCGGCG CGAGATCGCC GACGCCCTGG GGCTGGAGAG CCCGGAGCAT
CACGAGGCGC TGCGTCGCCG GCTGCGCGCC ATGGAGCGCG ACGGGCAGCT GGTGCGCAAC
CGCCGCCGCG GGTACCTGGT CGTCGATCAC AGCGAACTGG TCCGCGGTCG AGTCATGGGC
CGCCCGGACG GCTCCGGCTT CCTTCTGCCC GATGGCACGG GCGACCGGTT GGCCCTGTCG
CCGCGTCAGA TGCGCTGCCT GCTCCACGGC GATCGCGCTG TAGCACGCAT CACCGGCCGC
GACGAGCACG GTACCCCGCA GGGTGAGCTG GTCGAGATCC TCGAGCGCGG CAACCGGCAG
ATCACCGGGC GGTTCTTTGA GGAGCACGGG GTCGGGTTCC TGGTGCCGGA GAACAAGCGG
CTGCAGCAGG ACGTCCTGCT TGCGCCGGAC GGGCGCGGCG GTGCCGAGGA CGGTGAGCTG
GCGGTGGCCG AGATCCTCGC CCAGCCCAAC GAGCGTCGCC AGCCCATCGG CCGGATCATC
CAGGTGCTCG GGCGCACGAT CCATGTCGGC GAAGAGGACA TGGTGGCGGC GCGGATCCAC
GGCATCCCCA TGGATTGGCC CGCTGAGGTG GAGAAAGAGG TTGCGGCCTT CGGTGAGGAG
GTCCCGGAGG CCGACAAGGA AGGGCGCACC GATCTGCGCC GGCTGCCGCT GGTGACCATC
GACGGTGCCG ACGCCAAGGA CTTCGACGAC GCGCTCTATT GCGAGCCCAC CGCCAAGGGC
TGGCGCCTGG TGGTGGCCAT CGCCGACGTC TCGCACTACG TGCGCCCCGG CACGGCGCTG
GATCAGGAGG CGCGCCTGCG GGGCAACTCG GTCTACTTCC CGCGTTCGGT GGTGCCGATG
CTGCCCGAGG CCCTGTCCAA CGGGCTGTGC TCGCTGAACC CCAAGGTCGA TCGACTGGCC
ATGGTCTGCG ACATGCTCTT GCAGGGCAAC GGCAAGGTGC TGCGCTCGCG CTTCTACCGC
GCGGTGATCC AGTCGGCGGC GCGGCTGACC TACGAACAGG CCGCGGCGGC CGTGGTCGAC
GGCGACCGCA AGGTGCGATC GGCCATCGGC GACGAGGTGG TGCGCCACCT GGAGAACCTG
CACGGCCTCT ACAAGACGCT GCGCAAGGCC CGCGACGAGC GGGGGGCCAT CGACTTCGAC
ACCACCGAGA CCGAGATGCG CTTCGATGAC GAGGGGCGTG TGGTGGCCGT CGAGCCCACC
GAGCGCAACG ACTTCCACAA GGTCGTGGAA GAATGCATGA TCGCTGCCAA CGTCTGCACG
GCCAAGTTCC TGCTCAAGAA CAAGGTGCCG TCGCTCTATC GGGTCCACGA GCGCCCCGGT
GAGCAGAAGC TCGAGCAGCT CAAGGAGTTC CTCGCCCAGG CCGGGCTGGA ACTCGGCGGC
GGTGATGAGC CCACCGGCAA GGATTATGGC CGGATCATGG AGCAGGCCCG CGAGCGCCCG
GATCGCCACC TGATTGAGAC GGTGCTGCTG CGCTCGATGC AGGCGGCCGA GTATCGCCCC
GATAATGCGG GTCACTTCGG GCTGGCGCTG GAGGCGTATA CCCACTTCAC CTCGCCCATC
CGTCGTTATC CGGATCTGGT GATCCACCGA GGGATCGGCC ACGTGATTGA TGGCCACCGG
GGGCGTAGCT TCCCGATGAC CCACAACGAC CTGGTCACCC TCGGCGAGCA CTGCTCGATG
GCGGAGCGCC GGGCCGACGA GGCGACTCGC GATGCCGAGA TGACGCTCAA GTGCGAGTAC
CTCTCGGACC ACCTGGGGGA TGAGTTCACC GGGGTGATCG CGGCGGTGAC CTCCTTCGGG
CTGTTCGTCT CGCTGGAGGG GGTCTACGTG GACGGCCTGG TGCACATCAC TAACCTGGAG
AGTGACTTCT TCCACTTCGA TTCGGTGGGG CATCGGCTGG TCGGCGACCG CACCGGCAAG
GAGTACCGGC TCAGTGACCG GGTCCGGGTC CGCGTGGGGC GCGTCGACAA GGACGATCGC
AAGATCGACC TCGAGGTGGT CGCCCATCCG GTGGATGCCG ACGGTGAACC GCTGGACGGC
AGCCGCAAGC GTGGCAAGGG TGGCAAGAGC GGTCAGGGCG GCAAGGCCCG TTCGGAGCGC
TCCGGCGGCA AGCAGTCTGC GGCGCGCCAA GGGGCCTCCG GGGGGCGCGC GAAAAGCGGC
CGGGGCAAGG CCGCTCCATC CGGATCCGGC CCCTCCGGTG ACGGCAAGGG CAAGCCGGCC
GAAGCAGCCG AGGAGTCGGC GGAGCCGACG GCCGAAGCGC AGGATGGCGG CGCCAGCAAG
GGGCGGCGCC GAAGCCGGCG CTCCGGTCGT CGGCGCAGCA GCAGTAGCGC CGGCGGCGAC
AGCAGCTAA
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| Protein sequence | MAKQTKKSPP KRDPYQEREQ AKYDNPIPSR EYLLELLAAH RRPLGRREIA DALGLESPEH
HEALRRRLRA MERDGQLVRN RRRGYLVVDH SELVRGRVMG RPDGSGFLLP DGTGDRLALS
PRQMRCLLHG DRAVARITGR DEHGTPQGEL VEILERGNRQ ITGRFFEEHG VGFLVPENKR
LQQDVLLAPD GRGGAEDGEL AVAEILAQPN ERRQPIGRII QVLGRTIHVG EEDMVAARIH
GIPMDWPAEV EKEVAAFGEE VPEADKEGRT DLRRLPLVTI DGADAKDFDD ALYCEPTAKG
WRLVVAIADV SHYVRPGTAL DQEARLRGNS VYFPRSVVPM LPEALSNGLC SLNPKVDRLA
MVCDMLLQGN GKVLRSRFYR AVIQSAARLT YEQAAAAVVD GDRKVRSAIG DEVVRHLENL
HGLYKTLRKA RDERGAIDFD TTETEMRFDD EGRVVAVEPT ERNDFHKVVE ECMIAANVCT
AKFLLKNKVP SLYRVHERPG EQKLEQLKEF LAQAGLELGG GDEPTGKDYG RIMEQARERP
DRHLIETVLL RSMQAAEYRP DNAGHFGLAL EAYTHFTSPI RRYPDLVIHR GIGHVIDGHR
GRSFPMTHND LVTLGEHCSM AERRADEATR DAEMTLKCEY LSDHLGDEFT GVIAAVTSFG
LFVSLEGVYV DGLVHITNLE SDFFHFDSVG HRLVGDRTGK EYRLSDRVRV RVGRVDKDDR
KIDLEVVAHP VDADGEPLDG SRKRGKGGKS GQGGKARSER SGGKQSAARQ GASGGRAKSG
RGKAAPSGSG PSGDGKGKPA EAAEESAEPT AEAQDGGASK GRRRSRRSGR RRSSSSAGGD
SS
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