| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0329 |
|---|
| Symbol | |
|---|
| ID | 4711275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 372323 |
|---|
| End bp | 373939 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639854789 |
|---|
| Product | pilus (MSHA type) biogenesis protein MshL |
|---|
| Protein accession | YP_001001925 |
|---|
| Protein GI | 121997138 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.683129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCAC CACTGAGGCC CGTGCGCCTG TGGCTGGGTG TCGCCGGCGC CGCCGTGCTC
CTGGGGGCGT GTGCGTCATC GGGGGATCGG GCGCAGGAGC GCTCCGATCG CGCCGCCGAT
CACCTGGCGC CGACGGAGCC CGACGAGCAG GTCCGCCAGG AGGATCAAGC CTCCACGCAG
GCCCTGGACG ACGCGCTCGG TGCCCCCGGC CTGGGTGATC CGCTGGCGCT TCAGCCCGAG
GATCCGCGCT TTGACATCAC CGCCGACGGC GTCGGTGCCC GCGAGTTCTT CCACGGCCTG
GTGGAGGACA CCCCGTACAA CGTGGTGGTC CACCCGGATC TGGAGGGCGA GCTGTCGCTG
ACCCTGCGCG ACGTCTCCGT CCCCGAGGTG ATGGACACCG TCCGCGAGAT CTACGGCTAC
GAGTACAAGC AGGCGCGCAC CGGCTTCCTC ATCCTGCCCG CCCGCCCGCG GGCCGAGGTC
TTCCACCTGG ACTACCTCAA CGTCCATCGT AGCGGCCACT CCGGCACGCG GGTGACCTCC
GGCGAGATCA CCGGCGAGGA CGACGGCGAC GGCGTGATCG GCAGCCGGGT GGATACCGCC
TCGAACTCGG ATCTGTGGGG GCAGGTCGAG GAGACGGTGA GCCGCATGAT CGACGACGAC
GACACCGCCT CGGTGGTGGC CAGCCCCCAG GCGGGGACCC TGGCCGTGCG CGGCATGCCC
GAGTCCCTGC GCCGCGTCGA GGCGTTTGTC GACCGTCTGC AGGGCAGCCT CAACCGGCAG
GTGATCCTCG AGGCGCGCAT CCTCGAGGTC GAGCTCGGCG ACGACTTCCA GGCCGGGATC
AGCTGGGAGT CGCTCGGCCG GCACGACGGC CAGGCCCTCG AGGGCTCCTT CCGCCCGGGC
GATAACCTGG AGCTGAGTTC GGCCGGGGTG TTCAACATCG GGATCACCCG GGGCCAGGAC
GGGCAGCGGG GCTTCTTCGA GGGCTTCCTG CGTGCCCTGG AGCAGCAGGG CGACGTCCAG
GTCCTCTCGA CGCCGCAGGT CTCCACGCTC AACAATCAGA AGGCGGTGAT CAAGGCCGGA
ACGGACTCCT TCTATCAGAC GGACTTCAGC ATCAACTACC GGACCGTGGA GGTGGGGGGG
CAGACCACCA CCCAGCCGGA GCTGGATCCC GACTTCGAGC CGTTCTTCTC CGGCATCGCC
CTGGACGTCA CCCCGCAGAT CGAGGAGAGC GGCTGGATCA ACCTGCACGT CCAGCCCTCG
GTGACCGAGG TGCGCGAGCG GGAGCGCACC CTGAGAACCG GCCGGGGCGA TGACGAGGTC
CGCTTCTCGC TGGCCGAGAG CGACGTCCGC CAGTCCGACT CCATCGTCCG CGCCCGCAGC
GGCGAGATGA TCGTCATCGG CGGTCTGATC GAGGAGCGCG AGCAGCAGGA GACCTCCCGG
GTGCCGCTGC TCGGGCGGGT GCCGCTGCTG GGCTGGCTGT TCACCCAGGA GCGACAGGAG
TCGAGCAAGT ACGAGCTGGT GATCCTGCTG CGCCCCCGGG TCGTCGGGGA GGACACCTGG
GCCGGCGAAC TCGAGGAGCA CTCCCGGCGC ATCCAGGGGC TGTACGACCA CTACTGA
|
|---|
| Protein sequence | MNAPLRPVRL WLGVAGAAVL LGACASSGDR AQERSDRAAD HLAPTEPDEQ VRQEDQASTQ
ALDDALGAPG LGDPLALQPE DPRFDITADG VGAREFFHGL VEDTPYNVVV HPDLEGELSL
TLRDVSVPEV MDTVREIYGY EYKQARTGFL ILPARPRAEV FHLDYLNVHR SGHSGTRVTS
GEITGEDDGD GVIGSRVDTA SNSDLWGQVE ETVSRMIDDD DTASVVASPQ AGTLAVRGMP
ESLRRVEAFV DRLQGSLNRQ VILEARILEV ELGDDFQAGI SWESLGRHDG QALEGSFRPG
DNLELSSAGV FNIGITRGQD GQRGFFEGFL RALEQQGDVQ VLSTPQVSTL NNQKAVIKAG
TDSFYQTDFS INYRTVEVGG QTTTQPELDP DFEPFFSGIA LDVTPQIEES GWINLHVQPS
VTEVRERERT LRTGRGDDEV RFSLAESDVR QSDSIVRARS GEMIVIGGLI EEREQQETSR
VPLLGRVPLL GWLFTQERQE SSKYELVILL RPRVVGEDTW AGELEEHSRR IQGLYDHY
|
|---|
| |