Gene Hhal_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHhal_0316 
Symbol 
ID4711250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorhodospira halophila SL1 
KingdomBacteria 
Replicon accessionNC_008789 
Strand
Start bp358211 
End bp359248 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content69% 
IMG OID639854776 
Producttwitching motility protein 
Protein accessionYP_001001912 
Protein GI121997125 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.436596 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACATTA CCAAGCTGCT CAGCTTCGCC GTCGAACAGG GCGCCTCGGA TCTGCACCTC 
TCGGCCGGGC AGCCGCCGAT CATCCGGGTG GACGGCGACA TCCGCCGCGT GGACGCCCCG
GCGTTCAGCC ACAAGGACGT CCAGCGCCGC GTCTACGACA TCATGAACGA CGGCCAGCGC
CGCGAGTTCG AGGCGCGGAT GGAGACCGAC TTCTCCTTCG CCGCCCGCGG CATCGGGCGC
TTCCGCGTCA ACGCCTTCCA GCAGGACCGC GGCATGGGGG CGGTTTTCCG GGCCATCCCC
GACGAGATCC CCACCCTGCA GGGCCTGAGT GCGCCGCGGA TCTTCCGCGA CCTCTGCCAG
CTGCCCCGGG GGCTGATCCT GGTCACCGGG CCCACCGGCT CCGGCAAGTC GACCACCCTG
GCGGCGATGA TCAACGAGAA GAACCGCAGC GACTACGGAC ATATCCTCAC CATCGAGGAT
CCCATCGAGT TCGTCCACGA GCCGCAGCGC TGCCTGATCA ACCAGCGCGA GGTCCACCGC
GACACCCAGA GCTTCGACGC CGCCCTGCGC TCCGCCCTGC GCGAGGACCC GGACGTGATC
CTCGTCGGCG AGCTGCGCGA TCTGGAGACC ATCCGCCTGG CCCTGACCGC CGCCGAGACC
GGCCACCTGG TCTTCGGCAC GCTGCACACC TCCTCGGCCC CGAAGACCAT CGACCGCATC
ATCGACGTCT TCCCCGCCGC CGAGAAGGCC ATGGTCCGCT CCATGCTCTC GGAATCGCTC
CAGGCGGTGA TCGCCCAGAC CCTGCTCAAG CGCGCCAACG GCGGCCGCGT CGCCGCCCAC
GAGATCATGC TCGGCACCTC GGCCATCCGG AACCTCATCC GCGAGGACAA GGTGGCGCAG
ATGTACTCGA CGATGCAGAC GGCGCAGTCC CAGGGGATGC AGACCCTCGA CCACGCCCTG
CAGCAGCTGG TGCAGCAGGG CGTGGTGTCA ATGGAGGAGG CGGGGCGGAG GGGTGGGCGG
TCTCAGGCAT ACCAATAG
 
Protein sequence
MDITKLLSFA VEQGASDLHL SAGQPPIIRV DGDIRRVDAP AFSHKDVQRR VYDIMNDGQR 
REFEARMETD FSFAARGIGR FRVNAFQQDR GMGAVFRAIP DEIPTLQGLS APRIFRDLCQ
LPRGLILVTG PTGSGKSTTL AAMINEKNRS DYGHILTIED PIEFVHEPQR CLINQREVHR
DTQSFDAALR SALREDPDVI LVGELRDLET IRLALTAAET GHLVFGTLHT SSAPKTIDRI
IDVFPAAEKA MVRSMLSESL QAVIAQTLLK RANGGRVAAH EIMLGTSAIR NLIREDKVAQ
MYSTMQTAQS QGMQTLDHAL QQLVQQGVVS MEEAGRRGGR SQAYQ