Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hhal_0316 |
Symbol | |
ID | 4711250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhodospira halophila SL1 |
Kingdom | Bacteria |
Replicon accession | NC_008789 |
Strand | + |
Start bp | 358211 |
End bp | 359248 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639854776 |
Product | twitching motility protein |
Protein accession | YP_001001912 |
Protein GI | 121997125 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.436596 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACATTA CCAAGCTGCT CAGCTTCGCC GTCGAACAGG GCGCCTCGGA TCTGCACCTC TCGGCCGGGC AGCCGCCGAT CATCCGGGTG GACGGCGACA TCCGCCGCGT GGACGCCCCG GCGTTCAGCC ACAAGGACGT CCAGCGCCGC GTCTACGACA TCATGAACGA CGGCCAGCGC CGCGAGTTCG AGGCGCGGAT GGAGACCGAC TTCTCCTTCG CCGCCCGCGG CATCGGGCGC TTCCGCGTCA ACGCCTTCCA GCAGGACCGC GGCATGGGGG CGGTTTTCCG GGCCATCCCC GACGAGATCC CCACCCTGCA GGGCCTGAGT GCGCCGCGGA TCTTCCGCGA CCTCTGCCAG CTGCCCCGGG GGCTGATCCT GGTCACCGGG CCCACCGGCT CCGGCAAGTC GACCACCCTG GCGGCGATGA TCAACGAGAA GAACCGCAGC GACTACGGAC ATATCCTCAC CATCGAGGAT CCCATCGAGT TCGTCCACGA GCCGCAGCGC TGCCTGATCA ACCAGCGCGA GGTCCACCGC GACACCCAGA GCTTCGACGC CGCCCTGCGC TCCGCCCTGC GCGAGGACCC GGACGTGATC CTCGTCGGCG AGCTGCGCGA TCTGGAGACC ATCCGCCTGG CCCTGACCGC CGCCGAGACC GGCCACCTGG TCTTCGGCAC GCTGCACACC TCCTCGGCCC CGAAGACCAT CGACCGCATC ATCGACGTCT TCCCCGCCGC CGAGAAGGCC ATGGTCCGCT CCATGCTCTC GGAATCGCTC CAGGCGGTGA TCGCCCAGAC CCTGCTCAAG CGCGCCAACG GCGGCCGCGT CGCCGCCCAC GAGATCATGC TCGGCACCTC GGCCATCCGG AACCTCATCC GCGAGGACAA GGTGGCGCAG ATGTACTCGA CGATGCAGAC GGCGCAGTCC CAGGGGATGC AGACCCTCGA CCACGCCCTG CAGCAGCTGG TGCAGCAGGG CGTGGTGTCA ATGGAGGAGG CGGGGCGGAG GGGTGGGCGG TCTCAGGCAT ACCAATAG
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Protein sequence | MDITKLLSFA VEQGASDLHL SAGQPPIIRV DGDIRRVDAP AFSHKDVQRR VYDIMNDGQR REFEARMETD FSFAARGIGR FRVNAFQQDR GMGAVFRAIP DEIPTLQGLS APRIFRDLCQ LPRGLILVTG PTGSGKSTTL AAMINEKNRS DYGHILTIED PIEFVHEPQR CLINQREVHR DTQSFDAALR SALREDPDVI LVGELRDLET IRLALTAAET GHLVFGTLHT SSAPKTIDRI IDVFPAAEKA MVRSMLSESL QAVIAQTLLK RANGGRVAAH EIMLGTSAIR NLIREDKVAQ MYSTMQTAQS QGMQTLDHAL QQLVQQGVVS MEEAGRRGGR SQAYQ
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