| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0286 |
|---|
| Symbol | |
|---|
| ID | 4711226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 323168 |
|---|
| End bp | 324241 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639854746 |
|---|
| Product | electron transport complex, RnfABCDGE type, D subunit |
|---|
| Protein accession | YP_001001882 |
|---|
| Protein GI | 121997095 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
|---|
| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.364924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGAAC TGGTCGCCGG CCCCCACACC CGCGCCCCGC TGAGCCTGCC CACGCTGATG
CGCCAGGTCC TCCTGGCCGC GGCTCCGGCC ACCGCCTTCG GCGTGTGGCT CTACGGCTGG
CCGGCCCTGA ACCTGCTGCT CATCACCCTG GTCACCGTGC TGGTCGCCGA GGCGGCGTGC
CTACGCGCCG CCGGGCGGCC CGTGCGCAGC GGCCTGGGCG ACAGCTCGGC GCTGGTGGCC
GGCTGGATCC TGGCCATGAG CCTGCCCCCG TGGGCGCCCT GGTGGATCGG GGTCATCGGT
GGCCTGCTGG CCGTCGTCCT GGGCAAAGGG GTGTTCGGCG GCACCGGGCA GAACCTGTTC
AACCCGGCCA TGGTCGCCCG CGTGGCGCTG CTGATCGCCT TCCCGGTGGA GATGACCCGC
TGGGTCGAGC CCGCCCCCCT GGGCTCCGCC GTGGCGCCCG GGTTTCTCGA ATCCCTGGGG
ATCACCTTCA CCGGCACCGC CGACTGGGAT GCGGTCACCG GCGCCACCAC CCTGGACGCC
ACCCGCACCG CCGTCACCGA AGGGCAGAGC ATCGAGACCG CCCTGCCTGA GGCCTACCAG
CCCGCCCTGG CCCTGCTCGG CTACGCCCCG GGGAGCCTGG CCGAAGGCTC GGCGCTGCTG
CTCGCTCTCG GCGGGGTCTA CTTGATCTAC CGGCGGGTCA TCGCCTGGGA GATCCCGGCG
GTGATGCTCG CAACTCTGGC GGTGCTGGCC ACCGTCTTCC ACACCCTGGA TCCCACGCGC
TACGCCGATG CCGGCGTCCA CATCCTGGCC GGTTCCACCC TGCTCGCCGC CTTCTTCATC
GCCACCGACC CGACCACCTC ACCGACCACC ACCGTCGGCC GCGCGGTCTT CGCCGCCGGC
TGTGCAGTGA TCGTCTGGGT GGTGCGCACC TACGGCGGCT ACCCCGAGGC CACCGCCTTC
GCGGTGCTGC TGATGAACGC CTTCACGCCG CTGATCGACC ACTGGATCCG CCCCCGGGTC
TACGGCCGGA CCCGGCTGGG CGCCCCGCTG AGCACGGACC GGGAGGGCCC ATGA
|
|---|
| Protein sequence | MSELVAGPHT RAPLSLPTLM RQVLLAAAPA TAFGVWLYGW PALNLLLITL VTVLVAEAAC
LRAAGRPVRS GLGDSSALVA GWILAMSLPP WAPWWIGVIG GLLAVVLGKG VFGGTGQNLF
NPAMVARVAL LIAFPVEMTR WVEPAPLGSA VAPGFLESLG ITFTGTADWD AVTGATTLDA
TRTAVTEGQS IETALPEAYQ PALALLGYAP GSLAEGSALL LALGGVYLIY RRVIAWEIPA
VMLATLAVLA TVFHTLDPTR YADAGVHILA GSTLLAAFFI ATDPTTSPTT TVGRAVFAAG
CAVIVWVVRT YGGYPEATAF AVLLMNAFTP LIDHWIRPRV YGRTRLGAPL STDREGP
|
|---|
| |