| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0057 |
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| Symbol | |
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| ID | 4710354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 63692 |
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| End bp | 66202 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639854515 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001001654 |
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| Protein GI | 121996867 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACGAG GAGGGGATTA CGGGCGGCCA TCGGTTATCC CCGGCAGCAT CGCAGGTCGA
TACCCCGTCG GCGGGCAGAC CTGGCTGGCG GCACTTGATG CCATCGAGGT GCCGATCTTC
ATCCACGACG CCGAACACCG GGTCATCGAG GCCAACCGGG CCTACTACCA GCAGGCTGGC
CTGGCCCCCG AGGAGATCCT CGGCCGCCCC TACTATGAGA TCTTCCCCCT GTGCGACGGT
CCCCTACCCG GCTGCCGTCA CGGACTCCAG GCCGCTCACC CCGAGGGCGA CGAAGCCTCC
CCAACAAGCA GCGAGGCGGT GGAGGAGTAC TTCACCACCG ATGCTGGCCA TACCTTCCTG
TCGCGTTCTT TCACCGTCCA TGATGAGGAT GGTGCCTACC GGCACTCAGT GCACATCCTC
GAGAACATCA CCCGGCGCCG CCGTGCCGAA CAGGACCAGA AGCGGATCCA CCAGGCGCTG
CTTGAGCGGG AGGAGCAGCT CCACCGGCTG TTCGAGAACA TGACTGAGGG CGTCTTGGTG
GTCACGCCCG ACGGTACTGT GCGTTACGCC AACCCGAGTG CTGCGAACCT CTTTGCCCGG
GACAGTACGG CCTTGATTGG CGCGGTGATC GGCCTGCCGA TCGGTGGACC GGATGCTCAG
GAGATCGGGC TGCGCAGCCC CGCTGGGGAA CTGCGTACCG TAGAGATGCG CGTACGCGAG
ATCCGCTGGC ACGAACAACC GGCGCATCTG CTCAACCTGC GGGACGTCAC CGAGCGTAAG
CACATCGAGA CCGAACTGCG CCGAGCCGCC ATCGTCTTCG AAGAGGCCCA TGAAGCGATC
CTGGTCACCG ATGCGGAGCA GCGCGTCATT ACGGCCAACC CCGCCTTCAC CGAGATGACC
GGTTACACCG AGCAGGAGGT CCTTGGCAAG GACCTGGCAC TGCTCCGGTC GGGGTTCCAC
GACGAGTCGT TCTATACGGC CATTGACGAC GCCCTGGCCA AGCAGGGCTA CTGGACCGGC
GAGATGTGGA ACCGCTGCCG GGACGGCACC ACCTTCGCCA CCCTGGTCAC GGTGCGCGCG
ATCTACGACG ACGCCGGGCA CCTCACGCAC TACCTGGCGG TTCTGGCCGA CATCTCCCGC
CTGAAGGAGT ACCAGAGCCA GCTTGAGCGG ATCATGCACT CCGATCCGCT CACCGGCCTG
CCCAACCGGC TGGTCTTCCA GGACCGTCTC CATCAGGCGC TGGTAGCCAA CCAGAAACAG
ACCGGATTCT TCGCGGTCCT CTCCCTCGAC CTGAACGATC TCAAGGCGAT CAATTACAGC
CTCGGACATG CGGTGGGCGA TGCCATCCTG CAGCAGCTGG CCGAGCGGCT GCGCAACGCG
CTCTGTGAGG AGCACACCGT GGCGCGCCTG GGCGGGGATG AATTCGGTGT TCTACTCCTC
GGCGTCCGCG ACGCCAGCGA GGTCGCAGCG ATTACCGAGG ACCTGAGCAA GGGGCTCGAT
GAACCCTTTC AGATCGCCGA TCGAGCGATC CCCATCGCAG CGAGCATCGG CATTGCCGTC
TACCCCGAAC AAGATGCCGG CGCGGCGGAT CTCTTCCAGC AGGCCAACGC CGCCATGCAC
CAGGCCAAGC GCGAGGGTGT GAGTTACCGC TTCTTCAGTG AGGACCTCAC CGAACAGGCC
CGGGAACGGG TTCAGCTCGG CAGCGAACTC CGCGAGGCGC TCAACCAGGG TGCTCTGGAA
CTGCACTACC AGCCCCAGAT CGACCTGAGC AGCGGCGCCT GGGTCGGTTT GGAGGCCCTG
ATCCGCTGGC ACCATCCGGT TCAGGGGTGG ATCAGCCCGG AGCGGTTCAT CCCGGTGGCC
GAACGCATCG GCCTGGTGAC CACACTGGGC GCCTGGGTCC TAGAGCAGGC CTGCCGACAG
GGGCGCATCT GGCTGGATGC CGGCTTCGAA TTCGGCCGTC TGGGGGTCAA CTTTGCCGCC
CCCGAACTGA GTGCCCCCGA CCTGGCCGAG CGCGTGCTGG CGGCATTGGA TCGGGCCCGG
CTGCCCGCAC GATATCTGGA GATCGAGGTG ACGGAGCGCC TTCTGGTGGA TCCGGATCCG
GAGGTGATTC AGCAGTTGCA GCTACTCCGC AATCACGGGG TCACCGTGGC CCTGGATGAC
TTCGGAACCG GGTACTCGGC TCTGAGCTAT CTCCGCGACC TGCCGGTGGA TCGACTGAAG
ATCGACCGGA GCTTCGTCGA CGGCCTGCCC GACGACGAAC GCACCCTGGC CATCGCTCAG
GCCATCGCCG GTCTCGGTCG GAACCTCGGC TTCACCATCA TCGCCGAGGG CGTCGAGACG
CCCGCCCAGC GCGAGGCACT AATCGGGATC GGCTGCCCCT GGGCCCAGGG TTTCCTGTTC
GGCCGTCCCG CCCCCGTCGC CGGCATCGAG GCGCTCGCCC CGCACTTCCC CCGTACCGAC
ACCGAGGGCG GTCACAGTCG AGGGGGTGGT GACGCCGGTC GCGCGAAGTA G
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| Protein sequence | MRRGGDYGRP SVIPGSIAGR YPVGGQTWLA ALDAIEVPIF IHDAEHRVIE ANRAYYQQAG
LAPEEILGRP YYEIFPLCDG PLPGCRHGLQ AAHPEGDEAS PTSSEAVEEY FTTDAGHTFL
SRSFTVHDED GAYRHSVHIL ENITRRRRAE QDQKRIHQAL LEREEQLHRL FENMTEGVLV
VTPDGTVRYA NPSAANLFAR DSTALIGAVI GLPIGGPDAQ EIGLRSPAGE LRTVEMRVRE
IRWHEQPAHL LNLRDVTERK HIETELRRAA IVFEEAHEAI LVTDAEQRVI TANPAFTEMT
GYTEQEVLGK DLALLRSGFH DESFYTAIDD ALAKQGYWTG EMWNRCRDGT TFATLVTVRA
IYDDAGHLTH YLAVLADISR LKEYQSQLER IMHSDPLTGL PNRLVFQDRL HQALVANQKQ
TGFFAVLSLD LNDLKAINYS LGHAVGDAIL QQLAERLRNA LCEEHTVARL GGDEFGVLLL
GVRDASEVAA ITEDLSKGLD EPFQIADRAI PIAASIGIAV YPEQDAGAAD LFQQANAAMH
QAKREGVSYR FFSEDLTEQA RERVQLGSEL REALNQGALE LHYQPQIDLS SGAWVGLEAL
IRWHHPVQGW ISPERFIPVA ERIGLVTTLG AWVLEQACRQ GRIWLDAGFE FGRLGVNFAA
PELSAPDLAE RVLAALDRAR LPARYLEIEV TERLLVDPDP EVIQQLQLLR NHGVTVALDD
FGTGYSALSY LRDLPVDRLK IDRSFVDGLP DDERTLAIAQ AIAGLGRNLG FTIIAEGVET
PAQREALIGI GCPWAQGFLF GRPAPVAGIE ALAPHFPRTD TEGGHSRGGG DAGRAK
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