| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0028 |
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| Symbol | rumA |
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| ID | 4710243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | - |
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| Start bp | 30558 |
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| End bp | 31862 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639854486 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001001625 |
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| Protein GI | 121996838 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTCGCG AGCCGGTGGA GGCCCGTATC GAGGGCATGG CCCACGAGGG GCGGGGGATC
ACCCACGACG ATCAGGGTCG CCCGGTCTTT GTCGATTTCG CCTTGCCCGG CGAGCGGATC
CGCTACCGGT ATACCAAGCT GCGCCGTCAG CGGGCCGAGG CGACGGCCAT CGAGATTCTG
GAGCCAGCAG CCGAGCGGAT CGCGCCGGGT TGCGAACATT TCGGCAACTG CGGGGGGTGT
GCGCTCCAAC ACCTGCCCGC TGAGGCGCAG ATCGCCCACA AGGAGCGCGT CCTGGCCGAA
CAGCTGCAGC GTATCGGCGG CGTCGAGCCG GAGCAGTGGC TGGCACCGTT GACTGGTCCC
GCGTGGGGGT ATCGGCGCAA GGCACGGCTC GCCGTCAAGC ATGTGCCCAA AAAGGGCGGG
GTGCTGGTCG GCTTCCGCGA GAAGCACAGC CCGCTGGTCG CCCCGGTGGA GTACTGTCCG
GTCCTCGACC CGCGTGTGGG CGAGCGGATG CAGGGGCTGG CCGAGCTGGT CGGTTCGCTC
TCCATCCCCG ACCGCATCCC GCAGATCGAG GTAGCCTGCG GCGACAAGCA CGCGGCGCTG
GTGTTCCGCC ACCTGGCGCC GTTGACCGAG GATGATCTGG ATCGGCTGAG CGATTTCGCC
GAGGCCACCG GCCTGACGAT CCTCCGGCAA CCGGGGGATG AATCGACGGT GACCCCCGTG
GCACCGCAAC CGGCCCCGCA GCTAAGCTAT GCACTGTCGC CCTACGGGGT CGAGGTGGCG
TTCCTGCCCA CGGATTTCAC CCAGGTGAAC GCCTCCATCA ACATGGCCAT GGTCGAGCGC
GCCCTGGAAT GGCTGCAGCC GCAGTCGGGT CGTCGCATAC TCGACCTGTT CTGTGGCGTG
GGTAATTTCA CCCTGCCACT GGCACGGGAG GGCGCGACGG TCACCGGCAT TGAGGGCGAC
CCACGACTCG TCGAGCGAGC GGAGGAGAAT GCCGCGGCCA ACGGTCTGCA CGCCGATTTC
GCTGTGGCGG ATCTGGCCAC CGAGGAGGGA ACCCGGCGCG TGGCGGGGGG GTTCGATGCC
GTGCTCCTCG ACCCGCCACG CTCCGGTGCC CAGGAGGTAC TCTCCGCGGT TGCCGGCACC
GGGGCCCGGC GGGTGGTCTA CTGCTCCTGT GGCCCGGCAA CGCTGGCCCG CGATGCGGGG
ATTCTCGTCG CCGAGCACGG CTTCCGCCTG AATGCTGCGG GTATCATGGA CATGTTCCCG
CATACCGCCC ATGTGGAGAG CTTCGCGGTC TTTGACCGCG ACTGA
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| Protein sequence | MSREPVEARI EGMAHEGRGI THDDQGRPVF VDFALPGERI RYRYTKLRRQ RAEATAIEIL
EPAAERIAPG CEHFGNCGGC ALQHLPAEAQ IAHKERVLAE QLQRIGGVEP EQWLAPLTGP
AWGYRRKARL AVKHVPKKGG VLVGFREKHS PLVAPVEYCP VLDPRVGERM QGLAELVGSL
SIPDRIPQIE VACGDKHAAL VFRHLAPLTE DDLDRLSDFA EATGLTILRQ PGDESTVTPV
APQPAPQLSY ALSPYGVEVA FLPTDFTQVN ASINMAMVER ALEWLQPQSG RRILDLFCGV
GNFTLPLARE GATVTGIEGD PRLVERAEEN AAANGLHADF AVADLATEEG TRRVAGGFDA
VLLDPPRSGA QEVLSAVAGT GARRVVYCSC GPATLARDAG ILVAEHGFRL NAAGIMDMFP
HTAHVESFAV FDRD
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