Gene CJJ81176_0614 details

Gene Information

• Locus tag: CJJ81176_0614
• Symbol: ligA
• ID: 4683233
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni subsp. jejuni 81-176
• Kingdom: Bacteria
• Replicon accession: NC_008787
• Strand: +
• Start bp: 542220
• End bp: 544163
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 639853337
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001000287
• Protein GI: 121612203
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG AAGAGTATTT AGAAAAAGTT GCTTTAGCCA ATTTGTGGAT GAGGGCATAT 
TATGAAAAAG ATGAACCCTT GGCTAGCGAT GAAGAATACG ATGTTTTAAT CAGAGAATTA 
AGAGTTTTTG AAGAACAAAA TAAAGATGAA ATTTCAAAAG ACTCTCCAAC GCAAAAAATA 
GCCCCTACTA TACAAAGCGA GTTTAAAAAA ATAGCTCATT TAAAGCGTAT GTGGTCGATG 
GAAGATGTGT TTGATGAGAG TGAGCTTAGG GCTTGGGCAA AACGCGCAAA ATGTGAAAAA 
AACTTTTTTA TAGAGCCTAA ATTTGATGGA GCGAGTTTAA ATTTGCTTTA TGAAAATGGT 
AAATTAGTAA GCGGTGCCAC TAGGGGCGAT GGCGAAGTGG GTGAGGATAT AACGCTTAAT 
GTTTTTGAGA TAGAAAATAT ACCTAAAAAT ATAGCCTATA AAGAAAGGAT AGAAATTCGT 
GGAGAAGTGG TGATTTTAAA AGATGATTTT GAGAAAATCA ACGAAAAAAG AGCCCTTTTA 
AATCAAAGTT TATTTGCCAA TCCACGCAAT GCTGCAAGCG GGAGTTTAAG GCAGCTTGAT 
ACAAGCATCA CTAAAGAAAG AAATTTGAAA TTTTATCCTT GGGGAGTAGG GGAAAATACC 
TTAAATTTCA CCAAGCATAG CGAGGTGATG CAATTTATCA GAGAGCTTGG TTTTTTAAAA 
GATGATTTTA TTAAGCTTTG TGCTAATTTA GATGAGGTTT TAAAAGCTTA TGATGAGCTT 
TTAGCTCTAA GAGAAAAAAA GCCTATGATG ATGGATGGAA TGGTGGTAAG AATTGATGAT 
CTTGCACTTT GTGAAGAATT AGGTTATACG GTAAAATTTC CAAAATTTAT GGCAGCTTTT 
AAATTTCCTG CACTTGAAAA AACCACGCGT TTAATAGGTG TAAATTTACA AGTGGGAAGA 
AGTGGAGTGA TCACTCCTGT GGCGGTTTTA GAACCTGTAA ATTTAGATGG GGTTGTAGTA 
AAATCAGCCA CACTCCATAA TTTTGATGAG ATTGCAAGAC TTGATGTTAA AATCAATGAT 
TTTGTAAGCG TGATAAGAAG TGGCGATGTT ATCCCTAAAA TCACTAAGGT TTTTAAAGAT 
CGTAGAGAAG GTTTAGAGAT GGAAATTTCA CGCCCTAAGC TTTGTCCTAC TTGCCAAAGT 
GAGCTTTTGG ATGAAGGAAC TTTAATAAAA TGTCAAAATA TAGACTGTGA AGATAGACTT 
GTAAATTCTA TCATTCATTT TGTTTCTAAA AAATGTCTTA ATATCGACGG GCTTGGAGAA 
AATATAGTAG AGCTTTTATA CAAACACAAA AAAATCACTA CTCTTGAGAG CATTTTTCAT 
TTAAAATTTA GTGATTTTGA AGGTTTGGAA GGCTTTAAGG AAAAGAAAAT TAACAATCTT 
TTAAATGCTA TAGAACAAGC AAGAGAGTGT GAGCTTTTTC GTTTTATCAC AGCTTTAGGA 
ATAGAGCATA TTGGCGAGGT TGCGGCTAAA AAATTAAGCT TAAGTTTTGG TAAAGAGTGG 
CACAAGCAAA GCTTTGAAGC TTATGCCAAT TTAGAAGGTT TTGGAGAGCA AATGGCTTTA 
AGTCTTTGCG AATTTACGCG TGTTAATCAT GTAAGAATTG ATGAGTTTTA CAAGCTTTTA 
AATTTGAAAA TAGAAAAACT TGAAATCAAA AGCGATGGCG TGATTTTTGG TAAAACTTTT 
GTGATTACAG GCACTCTTTC ACGCCCAAGA GATGAGTTTA AGGCTTTAAT AGAAAAGCTT 
GGAGGTAAGG TAAGTAGTTC GGTTTCTAAA AAGACTGACT ATGTGCTTTT TGGAGAAGAG 
GCAGGTTCTA AGCTGATTAA GGCTAAAGAG CTTGAAGTAA AATGTATAGA TGAAAGTGCT 
TTTAATGAGC TTGTTAAAGA ATAG 

 

Protein sequence

MKKEEYLEKV ALANLWMRAY YEKDEPLASD EEYDVLIREL RVFEEQNKDE ISKDSPTQKI 
APTIQSEFKK IAHLKRMWSM EDVFDESELR AWAKRAKCEK NFFIEPKFDG ASLNLLYENG 
KLVSGATRGD GEVGEDITLN VFEIENIPKN IAYKERIEIR GEVVILKDDF EKINEKRALL 
NQSLFANPRN AASGSLRQLD TSITKERNLK FYPWGVGENT LNFTKHSEVM QFIRELGFLK 
DDFIKLCANL DEVLKAYDEL LALREKKPMM MDGMVVRIDD LALCEELGYT VKFPKFMAAF 
KFPALEKTTR LIGVNLQVGR SGVITPVAVL EPVNLDGVVV KSATLHNFDE IARLDVKIND 
FVSVIRSGDV IPKITKVFKD RREGLEMEIS RPKLCPTCQS ELLDEGTLIK CQNIDCEDRL 
VNSIIHFVSK KCLNIDGLGE NIVELLYKHK KITTLESIFH LKFSDFEGLE GFKEKKINNL 
LNAIEQAREC ELFRFITALG IEHIGEVAAK KLSLSFGKEW HKQSFEAYAN LEGFGEQMAL 
SLCEFTRVNH VRIDEFYKLL NLKIEKLEIK SDGVIFGKTF VITGTLSRPR DEFKALIEKL 
GGKVSSSVSK KTDYVLFGEE AGSKLIKAKE LEVKCIDESA FNELVKE