| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3954 |
|---|
| Symbol | |
|---|
| ID | 4692001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | + |
|---|
| Start bp | 4339896 |
|---|
| End bp | 4340903 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639851703 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_998679 |
|---|
| Protein GI | 121610872 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.599308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.261189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCGA CTCGACCATT GCCCCGACCC TCGTCCAGAT CATTGCGCCG CTTGGCCCTC
GGCCTGGGCC TTGCGTTCGG CCTGGGCGCC ACAGCGGCCG CGCAGACCAC GATGCGCATC
AACATCTCGA CGGCCCAGAA CTCCCACCAG GGCGTGGCCA TCGACACCTT TGCCAAGGAA
GTGGAAAAGC GCACCGGCGG CCGCTACAAG GTGCAGACCT TCTACAACGC GGCGCTGGGC
GCCGAACGCG AATCGGTCGA AGCGGTGCAA CTGGGCACGC ATGAACTGAC GTTCAGTTCC
TCCGGCCCGA TACCCAATTT CGTGCCCGAG ACCAAGATCC TGGATGTCCC CTTCCTGTTT
CGCGACAAGG CCCATGCGCG CGCCGTGCTC GACGGCCCCA TCGGCCAGGA GTTGCTGACC
CGGTTCGACG GCAAAGGGTT CAAGGCCCTG GCCTGGGCCG AGAACGGCTT TCGCCACATG
AGCAACAGCA AGCGCGCGGT CAAGGAACCC GGCGACCTCA AGGGCCTGAA GATGCGCACG
ATGGAAAACC CCGTGCATAT CGCCGCGTAC AAGGGCTTTG GCATCGTCAC CACGCCGATG
GCGTTCTCCG AGGTGTTCAC TGCGCTGCAG CAAGGCACGG TCGACGGTCA GGAAAACCCG
TTGTCGGTGA TCATCTCCGC CAAATTCGAC CAAGTGCAAA AGCACCTCAC GCTCACCGGT
CATGTCTACT CGCCGGCCCT GTTCCTGATG AACAAGGCCC TGTTCGACAA GCTCCCGGCG
GCAGACCAGC AGGCGTTCAT CGACGCCGCC CGGCAAGGCG CCAAGCTCAA CCGTGCGCGC
GTCGACGAAG ACGATGCCAA GGGCGTGGCC GACCTGCGCG CCAAGGGCAT GACCGTGATC
GATAACATCG ACAAAGCCCG CTTCGTCGCC GCCCTGGCGC CGGTGAACGC GCAATTCGAA
AAGCAGTTCG GCAAGGCCGC GCTCGAGCAG ATCCGCAGCG CCCAATGA
|
|---|
| Protein sequence | MPSTRPLPRP SSRSLRRLAL GLGLAFGLGA TAAAQTTMRI NISTAQNSHQ GVAIDTFAKE
VEKRTGGRYK VQTFYNAALG AERESVEAVQ LGTHELTFSS SGPIPNFVPE TKILDVPFLF
RDKAHARAVL DGPIGQELLT RFDGKGFKAL AWAENGFRHM SNSKRAVKEP GDLKGLKMRT
MENPVHIAAY KGFGIVTTPM AFSEVFTALQ QGTVDGQENP LSVIISAKFD QVQKHLTLTG
HVYSPALFLM NKALFDKLPA ADQQAFIDAA RQGAKLNRAR VDEDDAKGVA DLRAKGMTVI
DNIDKARFVA ALAPVNAQFE KQFGKAALEQ IRSAQ
|
|---|
| |